Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(2-2)-Internal loop cluster 1198 (cutoff=2.5 Å)
Cluster size 162 structure(s)
Representative structure 2j28:B (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence UD-AY
Cluster members
UA-AU
1c04:E, 12-26, 1c04:E, 7-31, 1hc8:C, 12-26, 1hc8:C, 7-31, 1hc8:D, 12-26, 1hc8:D, 7-31, 1qa6:C, 12-26, 1qa6:C, 7-31, 1qa6:D, 12-26, 1qa6:D, 7-31, 1y39:C, 12-26, 1y39:C, 7-31, 1y39:D, 12-26, 1y39:D, 7-31
UG-AC
1jj2:0, 1130-1154, 1jj2:0, 1135-1149, 1k73:A, 1130-1154, 1k73:A, 1135-1149, 1k8a:A, 1130-1154, 1k8a:A, 1135-1149, 1k9m:A, 1130-1154, 1k9m:A, 1135-1149, 1kc8:A, 1130-1154, 1kc8:A, 1135-1149, 1kd1:A, 1130-1154, 1kd1:A, 1135-1149, 1kqs:0, 1130-1154, 1kqs:0, 1135-1149, 1m1k:A, 1130-1154, 1m1k:A, 1135-1149, 1m90:A, 1130-1154, 1m90:A, 1135-1149, 1n8r:A, 1130-1154, 1n8r:A, 1135-1149, 1nji:A, 1130-1154, 1nji:A, 1135-1149, 1q7y:A, 1130-1154, 1q7y:A, 1135-1149, 1q82:A, 1130-1154, 1q82:A, 1135-1149, 1q86:A, 1130-1154, 1q86:A, 1135-1149, 1qvf:0, 1130-1154, 1qvf:0, 1135-1149, 1qvg:0, 1130-1154, 1qvg:0, 1135-1149, 1s72:0, 1130-1154, 1s72:0, 1135-1149, 1vq9:0, 1130-1154, 1vq9:0, 1135-1149, 1vqn:0, 1130-1154, 1vqn:0, 1135-1149, 1yhq:0, 1130-1154, 1yhq:0, 1135-1149, 1yj9:0, 1130-1154, 1yj9:0, 1135-1149, 2qa4:0, 1132-1159, 2qa4:0, 1137-1151, 3cc4:0, 1130-1154, 3cc4:0, 1135-1149, 3ccl:0, 1130-1154, 3ccl:0, 1135-1149, 3ccq:0, 1130-1154, 3ccq:0, 1135-1149, 3ccr:0, 1130-1154, 3ccr:0, 1135-1149, 3ccs:0, 1130-1154, 3ccs:0, 1135-1149, 3ccv:0, 1130-1154, 3ccv:0, 1135-1149, 3cd6:0, 1130-1154, 3cd6:0, 1135-1149, 3cpw:0, 1130-1154, 3cpw:0, 1135-1149
UU-AC
1pnu:0, 1018-1042, 1pnu:0, 1023-1037, 1pny:0, 1018-1042, 1pny:0, 1023-1037, 2zjp:X, 980-1004, 2zjp:X, 985-999, 2zjq:X, 980-1004, 2zjq:X, 985-999, 2zjr:X, 977-1001, 2zjr:X, 982-996, 3cf5:X, 980-1004, 3cf5:X, 985-999, 3dll:X, 980-1004, 3dll:X, 985-999
UU-AU
1c2w:B, 1057-1081, 1c2w:B, 1062-1076, 1mms:C, 12-26, 1mms:C, 7-31, 1mms:D, 12-26, 1mms:D, 7-31, 1oln:C, 12-26, 1oln:C, 7-31, 1s1i:3, 1232-1256, 1s1i:3, 1237-1251, 1vs6:B, 1041-1065, 1vs6:B, 1046-1060, 1vs8:B, 1041-1065, 1vs8:B, 1046-1060, 1vsa:w, 1082-1106, 1vsa:w, 1087-1101, 1vsp:w, 1082-1106, 1vsp:w, 1087-1101, 2aw4:B, 1041-1065, 2aw4:B, 1046-1060, 2awb:B, 1041-1065, 2awb:B, 1046-1060, 2gya:0, 985-1007, 2gya:0, 989-1003, 2i2t:B, 1041-1065, 2i2t:B, 1046-1060, 2i2v:B, 1041-1065, 2i2v:B, 1046-1060, 2j28:B, 1041-1065, 2j28:B, 1046-1060, 2jl6:A, 1087-1109, 2jl6:A, 1091-1105, 2jl8:A, 1087-1109, 2jl8:A, 1091-1105, 2jq7:B, 12-26, 2jq7:B, 8-30, 2qam:B, 1041-1065, 2qam:B, 1046-1060, 2qao:B, 1041-1065, 2qao:B, 1046-1060, 2qba:B, 1041-1065, 2qba:B, 1046-1060, 2qbc:B, 1041-1065, 2qbc:B, 1046-1060, 2qbe:B, 1041-1065, 2qbe:B, 1046-1060, 2qbg:B, 1041-1065, 2qbg:B, 1046-1060, 2qbi:B, 1041-1065, 2qbi:B, 1046-1060, 2qbk:B, 1041-1065, 2qbk:B, 1046-1060, 2qov:B, 1041-1065, 2qov:B, 1046-1060, 2qox:B, 1041-1065, 2qox:B, 1046-1060, 2qoz:B, 1041-1065, 2qoz:B, 1046-1060, 2qp1:B, 1041-1065, 2qp1:B, 1046-1060, 2vhm:B, 1041-1065, 2vhm:B, 1046-1060, 2z4l:B, 1041-1065, 2z4l:B, 1046-1060, 2z4n:B, 1041-1065, 2z4n:B, 1046-1060, 3bbx:B, 1119-1143, 3bbx:B, 1124-1138, 3deg:G, 15-39, 3deg:G, 20-34, 3df2:B, 1041-1065, 3df2:B, 1046-1060, 3df4:B, 1041-1065, 3df4:B, 1046-1060