Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(2-2)-Internal loop cluster 1559 (cutoff=1.0 Å)
Cluster size 430 structure(s)
Representative structure 2uu9:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence VA-VA
Cluster members
AA-CA
2zjp:X, 1402-1446, 2zjp:X, 1406-1442, 3cf5:X, 1402-1446, 3cf5:X, 1406-1442
CA-AA
2zjp:X, 1402-1446, 2zjp:X, 1406-1442, 2zjq:X, 1402-1446, 2zjq:X, 1406-1442, 2zjr:X, 1399-1443, 2zjr:X, 1403-1439, 3cf5:X, 1402-1446, 3cf5:X, 1406-1442, 3dll:X, 1402-1446, 3dll:X, 1406-1442
CA-GA
1fjg:A, 1235-1254, 1fjg:A, 1239-1250, 1hnw:A, 1235-1254, 1hnw:A, 1239-1250, 1hnx:A, 1235-1254, 1hnx:A, 1239-1250, 1hnz:A, 1235-1254, 1hnz:A, 1239-1250, 1hr0:A, 1235-1254, 1hr0:A, 1239-1250, 1i95:A, 1238-1257, 1i95:A, 1242-1253, 1i96:A, 1238-1257, 1i96:A, 1242-1253, 1ibk:A, 1235-1254, 1ibk:A, 1239-1250, 1ibl:A, 1235-1254, 1ibl:A, 1239-1250, 1j5e:A, 1235-1254, 1j5e:A, 1239-1250, 1n32:A, 1235-1254, 1n32:A, 1239-1250, 1pns:A, 1251-1270, 1pns:A, 1255-1266, 1pnx:A, 1251-1270, 1pnx:A, 1255-1266, 1s1h:A, 1236-1255, 1s1h:A, 1240-1251, 1xmo:A, 1230-1249, 1xmo:A, 1234-1245, 1xmq:A, 1230-1249, 1xmq:A, 1234-1245, 1xnq:A, 1230-1249, 1xnq:A, 1234-1245, 1xnr:A, 1230-1249, 1xnr:A, 1234-1245, 1yl4:A, 1235-1254, 1yl4:A, 1239-1250, 2b64:A, 1235-1254, 2b64:A, 1239-1250, 2b9m:A, 1235-1254, 2b9m:A, 1239-1250, 2b9o:A, 1235-1254, 2b9o:A, 1239-1250, 2e5l:A, 1236-1255, 2e5l:A, 1240-1251, 2f4v:A, 1235-1254, 2f4v:A, 1239-1250, 2hgi:A, 1235-1254, 2hgi:A, 1239-1250, 2hgp:A, 1235-1254, 2hgp:A, 1239-1250, 2hhh:A, 1235-1254, 2hhh:A, 1239-1250, 2ow8:y, 1235-1254, 2ow8:y, 1239-1250, 2qnh:y, 1235-1254, 2qnh:y, 1239-1250, 2uu9:A, 1235-1254, 2uu9:A, 1239-1250, 2uua:A, 1235-1254, 2uua:A, 1239-1250, 2uub:A, 1235-1254, 2uub:A, 1239-1250, 2uuc:A, 1235-1254, 2uuc:A, 1239-1250, 2uxc:A, 1235-1254, 2uxc:A, 1239-1250, 2uxd:A, 1213-1232, 2uxd:A, 1217-1228, 2vqe:A, 1235-1254, 2vqe:A, 1239-1250, 2vqf:A, 1235-1254, 2vqf:A, 1239-1250, 3d5a:A, 1235-1254, 3d5a:A, 1239-1250, 3d5c:A, 1235-1254, 3d5c:A, 1239-1250
GA-CA
2uxd:A, 1213-1232, 2uxd:A, 1217-1228
GA-GA
1fjg:A, 1392-1459, 1fjg:A, 1392-1459, 1hnw:A, 1392-1459, 1hnw:A, 1392-1459, 1hnx:A, 1392-1459, 1hnx:A, 1392-1459, 1i96:A, 1395-1462, 1i96:A, 1395-1462, 1ibk:A, 1392-1459, 1ibk:A, 1392-1459, 1ibl:A, 1392-1459, 1ibl:A, 1392-1459, 1ibm:A, 1392-1459, 1ibm:A, 1392-1459, 1j5e:A, 1392-1459, 1j5e:A, 1392-1459, 1nkw:0, 2239-2262, 1nkw:0, 2245-2256, 1nwx:0, 2239-2262, 1nwx:0, 2245-2256, 1nwy:0, 2239-2262, 1nwy:0, 2245-2256, 1ond:0, 2238-2261, 1ond:0, 2244-2255, 1sm1:0, 2239-2262, 1sm1:0, 2245-2256, 1vs6:B, 2294-2317, 1vs6:B, 2300-2311, 1vs6:B, 533-560, 1vs6:B, 539-554, 1vs6:B, 2294-2317, 1vs6:B, 2300-2311, 1vs6:B, 533-560, 1vs6:B, 539-554, 1vs8:B, 2294-2317, 1vs8:B, 2300-2311, 1vs8:B, 533-560, 1vs8:B, 539-554, 1vs8:B, 2294-2317, 1vs8:B, 2300-2311, 1vs8:B, 533-560, 1vs8:B, 539-554, 1xmo:A, 1386-1453, 1xmo:A, 1386-1453, 1xmq:A, 1386-1453, 1xnq:A, 1386-1453, 1xnq:A, 1386-1453, 1xnr:A, 1386-1453, 1xnr:A, 1386-1453, 1y69:0, 2239-2262, 1y69:0, 2245-2256, 1yl3:A, 2323-2346, 1yl3:A, 2329-2340, 2aar:0, 2239-2262, 2aar:0, 2245-2256, 2aar:0, 2239-2262, 2aar:0, 2245-2256, 2aw4:B, 2294-2317, 2aw4:B, 2300-2311, 2aw4:B, 533-560, 2aw4:B, 539-554, 2aw4:B, 2294-2317, 2aw4:B, 2300-2311, 2aw4:B, 533-560, 2aw4:B, 539-554, 2awb:B, 2294-2317, 2awb:B, 2300-2311, 2awb:B, 533-560, 2awb:B, 539-554, 2awb:B, 2294-2317, 2awb:B, 2300-2311, 2awb:B, 533-560, 2awb:B, 539-554, 2b66:A, 2267-2286, 2b66:A, 2271-2282, 2b9n:A, 2267-2286, 2b9n:A, 2271-2282, 2b9p:A, 2267-2286, 2b9p:A, 2271-2282, 2d3o:0, 2260-2283, 2d3o:0, 2266-2277, 2e5l:A, 1393-1460, 2e5l:A, 1393-1460, 2gy9:A, 1373-1440, 2gy9:A, 1373-1440, 2hgj:A, 2337-2360, 2hgj:A, 2343-2354, 2hgq:A, 2337-2360, 2hgq:A, 2343-2354, 2hgu:A, 2337-2360, 2hgu:A, 2343-2354, 2i2t:B, 2294-2317, 2i2t:B, 2300-2311, 2i2t:B, 533-560, 2i2t:B, 539-554, 2i2t:B, 2294-2317, 2i2t:B, 2300-2311, 2i2t:B, 533-560, 2i2t:B, 539-554, 2i2v:B, 2294-2317, 2i2v:B, 2300-2311, 2i2v:B, 533-560, 2i2v:B, 539-554, 2i2v:B, 2294-2317, 2i2v:B, 2300-2311, 2i2v:B, 533-560, 2i2v:B, 539-554, 2j01:A, 2225-2248, 2j01:A, 2231-2242, 2j01:A, 2225-2248, 2j01:A, 2231-2242, 2j03:A, 2225-2248, 2j03:A, 2231-2242, 2j03:A, 2225-2248, 2j03:A, 2231-2242, 2j28:B, 2294-2317, 2j28:B, 2300-2311, 2j28:B, 533-560, 2j28:B, 539-554, 2j28:B, 2294-2317, 2j28:B, 2300-2311, 2j28:B, 533-560, 2j28:B, 539-554, 2jl6:A, 2304-2327, 2jl6:A, 2310-2321, 2jl6:A, 2304-2327, 2jl6:A, 2310-2321, 2jl8:A, 2304-2327, 2jl8:A, 2310-2321, 2jl8:A, 2304-2327, 2jl8:A, 2310-2321, 2o43:A, 2239-2262, 2o43:A, 2245-2256, 2o43:A, 2239-2262, 2o43:A, 2245-2256, 2o45:A, 2227-2250, 2o45:A, 2233-2244, 2ogm:0, 2239-2262, 2ogm:0, 2245-2256, 2ogm:0, 2239-2262, 2ogm:0, 2245-2256, 2ogn:0, 2239-2262, 2ogn:0, 2245-2256, 2ogn:0, 2239-2262, 2ogn:0, 2245-2256, 2ogo:0, 2238-2261, 2ogo:0, 2244-2255, 2ogo:0, 2238-2261, 2ogo:0, 2244-2255, 2qam:B, 2294-2317, 2qam:B, 2300-2311, 2qam:B, 533-560, 2qam:B, 539-554, 2qam:B, 2294-2317, 2qam:B, 2300-2311, 2qam:B, 533-560, 2qam:B, 539-554, 2qao:B, 2294-2317, 2qao:B, 2300-2311, 2qao:B, 533-560, 2qao:B, 539-554, 2qao:B, 2294-2317, 2qao:B, 2300-2311, 2qao:B, 533-560, 2qao:B, 539-554, 2qba:B, 2294-2317, 2qba:B, 2300-2311, 2qba:B, 533-560, 2qba:B, 539-554, 2qba:B, 2294-2317, 2qba:B, 2300-2311, 2qba:B, 533-560, 2qba:B, 539-554, 2qbc:B, 2294-2317, 2qbc:B, 2300-2311, 2qbc:B, 533-560, 2qbc:B, 539-554, 2qbc:B, 2294-2317, 2qbc:B, 2300-2311, 2qbc:B, 533-560, 2qbc:B, 539-554, 2qbe:B, 2294-2317, 2qbe:B, 2300-2311, 2qbe:B, 533-560, 2qbe:B, 539-554, 2qbe:B, 2294-2317, 2qbe:B, 2300-2311, 2qbe:B, 533-560, 2qbe:B, 539-554, 2qbg:B, 2294-2317, 2qbg:B, 2300-2311, 2qbg:B, 533-560, 2qbg:B, 539-554, 2qbg:B, 2294-2317, 2qbg:B, 2300-2311, 2qbg:B, 533-560, 2qbg:B, 539-554, 2qbi:B, 2294-2317, 2qbi:B, 2300-2311, 2qbi:B, 533-560, 2qbi:B, 539-554, 2qbi:B, 2294-2317, 2qbi:B, 2300-2311, 2qbi:B, 533-560, 2qbi:B, 539-554, 2qbk:B, 2294-2317, 2qbk:B, 2300-2311, 2qbk:B, 533-560, 2qbk:B, 539-554, 2qbk:B, 2294-2317, 2qbk:B, 2300-2311, 2qbk:B, 533-560, 2qbk:B, 539-554, 2qov:B, 2294-2317, 2qov:B, 2300-2311, 2qov:B, 533-560, 2qov:B, 539-554, 2qov:B, 533-560, 2qov:B, 539-554, 2qox:B, 2294-2317, 2qox:B, 2300-2311, 2qox:B, 533-560, 2qox:B, 539-554, 2qox:B, 533-560, 2qox:B, 539-554, 2qoz:B, 2294-2317, 2qoz:B, 2300-2311, 2qoz:B, 533-560, 2qoz:B, 539-554, 2qoz:B, 2294-2317, 2qoz:B, 2300-2311, 2qoz:B, 533-560, 2qoz:B, 539-554, 2qp1:B, 2294-2317, 2qp1:B, 2300-2311, 2qp1:B, 533-560, 2qp1:B, 539-554, 2qp1:B, 2294-2317, 2qp1:B, 2300-2311, 2qp1:B, 533-560, 2qp1:B, 539-554, 2uu9:A, 1392-1459, 2uu9:A, 1392-1459, 2uuc:A, 1392-1459, 2uxc:A, 1392-1459, 2uxc:A, 1392-1459, 2uxd:A, 1370-1430, 2uxd:A, 1370-1430, 2v47:A, 2222-2241, 2v47:A, 2226-2237, 2v47:A, 2222-2241, 2v47:A, 2226-2237, 2v49:A, 2222-2241, 2v49:A, 2226-2237, 2v49:A, 2222-2241, 2v49:A, 2226-2237, 2vhm:B, 2294-2317, 2vhm:B, 2300-2311, 2vhn:B, 2294-2317, 2vhn:B, 2300-2311, 2vhn:B, 534-559, 2vhn:B, 539-554, 2vhn:B, 534-559, 2vhn:B, 539-554, 2vqe:A, 1392-1459, 2vqe:A, 1392-1459, 2vqf:A, 1392-1459, 2vqf:A, 1392-1459, 2z4l:B, 2294-2317, 2z4l:B, 2300-2311, 2z4l:B, 533-560, 2z4l:B, 539-554, 2z4l:B, 2294-2317, 2z4l:B, 2300-2311, 2z4l:B, 533-560, 2z4l:B, 539-554, 2z4n:B, 2294-2317, 2z4n:B, 2300-2311, 2z4n:B, 533-560, 2z4n:B, 539-554, 2z4n:B, 2294-2317, 2z4n:B, 2300-2311, 2z4n:B, 533-560, 2z4n:B, 539-554, 2zjq:X, 2150-2173, 2zjq:X, 2156-2167, 2zjq:X, 2150-2173, 2zjq:X, 2156-2167, 2zjr:X, 2147-2170, 2zjr:X, 2153-2164, 2zjr:X, 2147-2170, 2zjr:X, 2153-2164, 3bbo:A, 514-540, 3bbo:A, 520-534, 3bbo:A, 514-540, 3bbo:A, 520-534, 3bbx:B, 2571-2594, 3bbx:B, 2577-2588, 3bbx:B, 533-560, 3bbx:B, 539-554, 3bbx:B, 2571-2594, 3bbx:B, 2577-2588, 3bbx:B, 533-560, 3bbx:B, 539-554, 3cf5:X, 2150-2173, 3cf5:X, 2156-2167, 3cf5:X, 2150-2173, 3cf5:X, 2156-2167, 3d5b:A, 2332-2355, 3d5b:A, 2338-2349, 3d5b:A, 2332-2355, 3d5b:A, 2338-2349, 3d5d:A, 2332-2355, 3d5d:A, 2338-2349, 3d5d:A, 2332-2355, 3d5d:A, 2338-2349, 3df2:B, 2294-2317, 3df2:B, 2300-2311, 3df2:B, 533-560, 3df2:B, 539-554, 3df2:B, 2294-2317, 3df2:B, 2300-2311, 3df2:B, 533-560, 3df2:B, 539-554, 3df4:B, 2294-2317, 3df4:B, 2300-2311, 3df4:B, 533-560, 3df4:B, 539-554, 3df4:B, 2294-2317, 3df4:B, 2300-2311, 3df4:B, 533-560, 3df4:B, 539-554, 3dll:X, 2150-2173, 3dll:X, 2156-2167, 3dll:X, 2150-2173, 3dll:X, 2156-2167