RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(2-2)-Internal loop cluster 1420 (cutoff=0.5 Å)
Cluster size	58 structure(s)
Representative structure	2qbe:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	UU-AU
Cluster members
UU-AU 1mms:C, 12-26, 1mms:C, 7-31, 1mms:D, 12-26, 1mms:D, 7-31, 1oln:C, 12-26, 1oln:C, 7-31, 1s1i:3, 1232-1256, 1s1i:3, 1237-1251, 1vs6:B, 1041-1065, 1vs6:B, 1046-1060, 1vs8:B, 1041-1065, 1vs8:B, 1046-1060, 2aw4:B, 1041-1065, 2aw4:B, 1046-1060, 2awb:B, 1041-1065, 2awb:B, 1046-1060, 2i2t:B, 1041-1065, 2i2t:B, 1046-1060, 2i2v:B, 1041-1065, 2i2v:B, 1046-1060, 2j28:B, 1041-1065, 2j28:B, 1046-1060, 2qam:B, 1041-1065, 2qam:B, 1046-1060, 2qao:B, 1041-1065, 2qao:B, 1046-1060, 2qba:B, 1041-1065, 2qba:B, 1046-1060, 2qbc:B, 1041-1065, 2qbc:B, 1046-1060, 2qbe:B, 1041-1065, 2qbe:B, 1046-1060, 2qbg:B, 1041-1065, 2qbg:B, 1046-1060, 2qbi:B, 1041-1065, 2qbi:B, 1046-1060, 2qbk:B, 1041-1065, 2qbk:B, 1046-1060, 2qov:B, 1041-1065, 2qov:B, 1046-1060, 2qox:B, 1041-1065, 2qox:B, 1046-1060, 2qoz:B, 1041-1065, 2qoz:B, 1046-1060, 2qp1:B, 1041-1065, 2qp1:B, 1046-1060, 2z4l:B, 1041-1065, 2z4l:B, 1046-1060, 2z4n:B, 1041-1065, 2z4n:B, 1046-1060, 3bbx:B, 1119-1143, 3bbx:B, 1124-1138, 3deg:G, 15-39, 3deg:G, 20-34, 3df2:B, 1041-1065, 3df2:B, 1046-1060, 3df4:B, 1041-1065, 3df4:B, 1046-1060