Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(1-1)-Internal loop cluster 1607 (cutoff=0.5 Å)
Cluster size 163 structure(s)
Representative structure 1yl4:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence N-N
Cluster members
A-C
1u9s:A, 100-118, 1u9s:A, 103-115, 1yi2:9, 71-110, 1yij:9, 71-110, 1yit:9, 71-110, 1yjn:9, 71-110, 1yjw:9, 71-110, 3cc2:9, 71-110, 3cc4:9, 71-110, 3cce:9, 71-110, 3ccq:9, 71-110, 3ccr:9, 71-110, 3ccu:9, 71-110, 3cma:9, 71-110
A-U
1wsu:E, 1-25, 1wsu:E, 6-20, 1wsu:F, 1-25, 1wsu:F, 6-20, 1wsu:G, 1-24, 1wsu:G, 6-19, 1y69:0, 1146-1194, 1yl3:A, 2077-2219, 2aar:0, 1994-2135, 2gy9:A, 111-217, 2gy9:A, 564-606, 2gyc:0, 1982-2073, 2gyc:0, 1985-2070, 2qa4:0, 1520-1615, 2qa4:0, 1523-1612, 2uwm:C, 1-23, 2uwm:C, 6-18, 2vhn:B, 2-2848, 2vhn:B, 5-2845
C-A
1u9s:A, 100-118, 1u9s:A, 103-115, 3cc4:9, 71-110, 3cce:9, 71-110, 3ccq:9, 71-110, 3ccr:9, 71-110
C-G
2aar:0, 671-686, 2aar:0, 674-683, 2f4v:A, 35-394, 2f4v:A, 38-391, 2o44:A, 801-885, 2ogn:0, 775-1143, 2ogn:0, 779-1139, 2qa4:0, 1509-1626, 2vhm:B, 838-924, 2vhn:B, 15-525
G-C
1n36:A, 243-265, 1n36:A, 247-261, 2aar:0, 671-686, 2aar:0, 674-683, 2f4v:A, 35-394, 2f4v:A, 38-391, 2ogn:0, 775-1143, 2ogn:0, 779-1139, 2qa4:0, 1509-1626, 2v46:A, 35-394, 2v46:A, 39-390, 2v48:A, 35-394, 2v48:A, 39-390, 2vhm:B, 15-525, 2vhn:B, 15-525
G-U
1ibm:A, 1397-1454, 1n34:A, 919-1212, 1n34:A, 924-1207, 1n36:A, 920-1211, 1n36:A, 924-1207, 1nkw:0, 1717-1753, 1nwx:0, 1717-1753, 1nwy:0, 1717-1753, 1ond:0, 493-519, 1ond:0, 499-513, 1ond:0, 1716-1752, 1xbp:0, 1717-1753, 1xnq:A, 1391-1448, 1y69:0, 816-870, 1yl4:A, 577-619, 1z43:A, 3-101, 1z43:A, 7-97, 2f4v:A, 919-1212, 2f4v:A, 924-1207, 2o45:A, 495-517, 2o45:A, 499-513, 2ogn:0, 2287-2313, 2ogn:0, 2290-2310, 2qa4:0, 721-736, 2qa4:0, 725-732, 2zjq:X, 1410-1434
U-A
1wsu:E, 1-25, 1wsu:E, 6-20, 1wsu:F, 1-25, 1wsu:F, 6-20, 2gy9:A, 564-606, 2gyc:0, 1982-2073, 2gyc:0, 1985-2070, 2uwm:C, 1-23, 2uwm:C, 6-18, 3bbo:A, 2020-2174, 3bbo:A, 2023-2171
U-G
1ibm:A, 1397-1454, 1n34:A, 919-1212, 1n34:A, 924-1207, 1n36:A, 920-1211, 1n36:A, 924-1207, 1ond:0, 493-519, 1ond:0, 499-513, 1xnq:A, 1391-1448, 1y69:0, 816-870, 2o45:A, 495-517, 2o45:A, 499-513
U-U
1p9x:0, 1975-2103, 1p9x:0, 1979-2099, 1p9x:0, 1975-2103, 1p9x:0, 1979-2099, 1un6:F, 31-44, 1un6:F, 34-41, 1un6:F, 31-44, 1un6:F, 34-41, 1vs8:B, 2067-2183, 1vs8:B, 2071-2179, 1z58:2, 1991-2107, 2awb:B, 2067-2183, 2awb:B, 2071-2179, 2d3o:0, 2000-2149, 2d3o:0, 2004-2145, 2gya:0, 1966-2107, 2gya:0, 1970-2103, 2gya:0, 1966-2107, 2gya:0, 1970-2103, 2i2v:B, 2067-2183, 2i2v:B, 2071-2179, 2j01:A, 2000-2114, 2j01:A, 2004-2110, 2j03:A, 2000-2114, 2j03:A, 2004-2110, 2j28:B, 2067-2183, 2j28:B, 2071-2179, 2jl6:A, 2079-2193, 2jl6:A, 2083-2189, 2jl8:A, 2079-2193, 2jl8:A, 2083-2189, 2qam:B, 2067-2183, 2qam:B, 2071-2179, 2qao:B, 2067-2183, 2qao:B, 2071-2179, 2qba:B, 2067-2183, 2qba:B, 2071-2179, 2qbc:B, 2067-2183, 2qbc:B, 2071-2179, 2qbe:B, 2067-2183, 2qbe:B, 2071-2179, 2qbg:B, 2067-2183, 2qbg:B, 2071-2179, 2v47:A, 2000-2109, 2v47:A, 2004-2105, 2v49:A, 2000-2109, 2v49:A, 2004-2105, 3d5b:A, 2078-2221, 3d5b:A, 2082-2217, 3d5d:A, 2078-2221, 3d5d:A, 2082-2217