RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(019)-Segment cluster 117 (cutoff=2.5 Å)
Cluster size	71 structure(s)
Representative structure	2qao:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	AGUGAAADAGARCKUGAAA
Cluster members
AGUGAAAAAGAACCUGAAA 1vs6:B, 496-516, 1vs8:B, 496-516, 2aw4:B, 496-516, 2awb:B, 496-516, 2gya:0, 439-459, 2i2t:B, 496-516, 2i2v:B, 496-516, 2j28:B, 496-516, 2qam:B, 496-516, 2qao:B, 496-516, 2qba:B, 496-516, 2qbc:B, 496-516, 2qbe:B, 496-516, 2qbg:B, 496-516, 2qbi:B, 496-516, 2qbk:B, 496-516, 2qov:B, 496-516, 2qox:B, 496-516, 2qoz:B, 496-516, 2qp1:B, 496-516, 2vhm:B, 496-516, 2vhn:B, 496-516, 2z4l:B, 496-516, 2z4n:B, 496-516, 3bbx:B, 496-516, 3df2:B, 496-516, 3df4:B, 496-516 AGUGAAAGAGAACCUGAAA 1j5a:A, 461-481, 1jzx:A, 461-481, 1jzy:A, 461-481, 1jzz:A, 461-481, 1k01:A, 461-481, 1njm:0, 456-476, 1njn:0, 456-476, 1njo:0, 456-476, 1njp:0, 456-476, 1nkw:0, 456-476, 1nwx:0, 456-476, 1nwy:0, 456-476, 1ond:0, 456-476, 1pnu:0, 456-476, 1pny:0, 456-476, 1sm1:0, 456-476, 1xbp:0, 456-476, 1y69:0, 456-476, 1z58:2, 450-470, 2aar:0, 456-476, 2d3o:0, 456-476, 2o43:A, 456-476, 2o44:A, 456-476, 2o45:A, 456-476, 2ogm:0, 456-476, 2ogn:0, 456-476, 2ogo:0, 455-475, 2zjp:X, 434-454, 2zjq:X, 434-454, 2zjr:X, 434-454, 3cf5:X, 434-454, 3dll:X, 434-454 AGUGAAAUAGAACAUGAAA 3bbo:A, 477-497 AGUGAAAUAGAGCCUGAAA 1vsa:w, 522-542, 1vsp:w, 522-542, 1yl3:A, 521-541, 2j01:A, 510-530, 2j03:A, 510-530, 2jl6:A, 510-530, 2jl8:A, 510-530, 2v47:A, 510-530, 2v49:A, 510-530, 3d5b:A, 517-537, 3d5d:A, 517-537