RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(016)-Segment cluster 102 (cutoff=3.0 Å)
Cluster size	47 structure(s)
Representative structure	2qbk:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	RAGAUGAGMYCUCCCW
Cluster members
AAGAUGAGGCCUCCCA 1vsa:w, 2765-2782, 1vsp:w, 2765-2782 AAGAUGAGUUCUCCCA 1njm:0, 2667-2684, 1njn:0, 2667-2684, 1njo:0, 2667-2684, 1njp:0, 2667-2684, 1nkw:0, 2667-2684, 1nwx:0, 2667-2684, 1nwy:0, 2667-2684, 1ond:0, 2666-2683, 1pnu:0, 2711-2728, 1pny:0, 2711-2728, 1sm1:0, 2667-2684, 1xbp:0, 2667-2684, 2aar:0, 2667-2684, 2d3o:0, 2688-2705, 2ogm:0, 2667-2684, 2ogn:0, 2667-2684, 2ogo:0, 2666-2683, 2zjp:X, 2578-2595, 2zjq:X, 2578-2595, 2zjr:X, 2575-2592, 3cf5:X, 2578-2595, 3dll:X, 2578-2595 GAGAUGAGUUCUCCCU 1vs6:B, 2721-2738, 1vs8:B, 2721-2738, 2aw4:B, 2721-2738, 2awb:B, 2721-2738, 2i2t:B, 2721-2738, 2i2v:B, 2721-2738, 2j28:B, 2721-2738, 2qam:B, 2721-2738, 2qao:B, 2721-2738, 2qba:B, 2721-2738, 2qbc:B, 2721-2738, 2qbe:B, 2721-2738, 2qbg:B, 2721-2738, 2qbi:B, 2721-2738, 2qbk:B, 2721-2738, 2qov:B, 2721-2738, 2qox:B, 2721-2738, 2qoz:B, 2721-2738, 2qp1:B, 2721-2738, 2z4l:B, 2721-2738, 2z4n:B, 2721-2738, 3df2:B, 2721-2738, 3df4:B, 2721-2738