Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(009)-Segment cluster 959 (cutoff=2.5 Å)
Cluster size 112 structure(s)
Representative structure 3ccr:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNNNNN
Cluster members
ACCCGAAGU
1n34:A, 1405-1415
AGGCGCCGA
1i97:A, 1435-1445
AGGUAGGGG
3bbo:A, 1004-1014
AUGGAUUCA
1xbp:0, 1104-1114
CAAGGGGAG
1yl3:A, 1860-1870
CAAGUGGAG
1z58:2, 1768-1778
CCGAAGCUA
2b9m:A, 828-838
CGAACCGAA
1yl3:A, 1881-1891
CGUUCUGUA
2gya:0, 1120-1130
CUCAAGGGC
1njm:0, 1422-1432, 1njn:0, 1422-1432, 1njo:0, 1422-1432, 1njp:0, 1422-1432, 1nkw:0, 1422-1432, 1nwx:0, 1422-1432, 1nwy:0, 1422-1432, 1ond:0, 1422-1432, 1pnu:0, 1438-1448, 1pny:0, 1438-1448, 1sm1:0, 1422-1432, 1xbp:0, 1422-1432, 2d3o:0, 1422-1432, 2gya:0, 1395-1405, 2gyc:0, 1395-1405
GAAAUGAAG
1nkw:0, 1799-1809, 1nwx:0, 1799-1809, 1nwy:0, 1799-1809, 1ond:0, 1798-1808, 1sm1:0, 1799-1809, 2o43:A, 1799-1809, 2o45:A, 1796-1806, 2ogn:0, 1799-1809
GAACCGUGA
2gy9:A, 993-1003
GGAGCGGGC
1i97:A, 1396-1406
GGAUGCCCU
1p9x:0, 25-35
GGAUGCCUC
2hgq:A, 25-35
GGGCAGUUU
2hgq:A, 2226-2236
GGGCGAAGU
1hnz:A, 1459-1469
UAAACACAA
1ffk:0, 424-434, 1jj2:0, 425-435, 1k73:A, 425-435, 1k8a:A, 425-435, 1k9m:A, 425-435, 1kc8:A, 425-435, 1kd1:A, 425-435, 1kqs:0, 425-435, 1m1k:A, 425-435, 1m90:A, 425-435, 1n8r:A, 425-435, 1nji:A, 425-435, 1q7y:A, 425-435, 1q81:A, 425-435, 1q82:A, 425-435, 1q86:A, 425-435, 1qvf:0, 425-435, 1qvg:0, 425-435, 1s1i:3, 424-434, 1s72:0, 425-435, 1vq4:0, 425-435, 1vq5:0, 425-435, 1vq6:0, 425-435, 1vq7:0, 425-435, 1vq8:0, 425-435, 1vq9:0, 425-435, 1vqk:0, 425-435, 1vql:0, 425-435, 1vqm:0, 425-435, 1vqn:0, 425-435, 1vqo:0, 425-435, 1vqp:0, 425-435, 1w2b:0, 425-435, 1yhq:0, 425-435, 1yi2:0, 425-435, 1yij:0, 425-435, 1yit:0, 425-435, 1yj9:0, 425-435, 1yjn:0, 425-435, 1yjw:0, 425-435, 2otj:0, 425-435, 2otl:0, 425-435, 2qa4:0, 425-435, 2qex:0, 425-435, 3cc2:0, 425-435, 3cc4:0, 425-435, 3cc7:0, 425-435, 3cce:0, 425-435, 3ccj:0, 425-435, 3ccl:0, 425-435, 3ccm:0, 425-435, 3ccq:0, 425-435, 3ccr:0, 425-435, 3ccs:0, 425-435, 3ccu:0, 425-435, 3ccv:0, 425-435, 3cd6:0, 425-435, 3cma:0, 425-435, 3cme:0, 425-435, 3cpw:0, 425-435
UAAAUACUC
2o44:A, 389-399, 2o45:A, 389-399
UCAAGUGGA
1nkw:0, 1776-1786, 1nwx:0, 1776-1786, 1nwy:0, 1776-1786, 1ond:0, 1775-1785, 1sm1:0, 1776-1786, 2o43:A, 1776-1786, 2o45:A, 1773-1783, 2ogn:0, 1776-1786
UCAGAUUGA
2vho:A, 19-29, 2vhp:A, 19-29
UCAGGGUGA
1fka:A, 19-29
UUCAGAACG
3bbo:A, 2522-2532