Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(005)-Hairpin cluster 383 (cutoff=2.0 Å)
Cluster size 332 structure(s)
Representative structure 1qvg:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNN
Cluster members
AAAAU
2zjp:X, 1420-1426, 2zjq:X, 1420-1426, 2zjr:X, 1417-1423, 3cf5:X, 1420-1426, 3dll:X, 1420-1426
ACUGG
2gis:A, 23-29
AGCUU
2gy9:A, 74-80, 2gyb:A, 74-80
AUCCC
1c2w:B, 885-891
AUUAA
1c2w:B, 1779-1785
CAAAU
1c2w:B, 1492-1498, 1vs6:B, 1476-1482, 1vs8:B, 1476-1482, 1vsa:w, 1517-1523, 1vsp:w, 1517-1523, 2aw4:B, 1476-1482, 2awb:B, 1476-1482, 2i2t:B, 1476-1482, 2i2v:B, 1476-1482, 2j28:B, 1476-1482, 2qam:B, 1476-1482, 2qao:B, 1476-1482, 2qba:B, 1476-1482, 2qbc:B, 1476-1482, 2qbe:B, 1476-1482, 2qbg:B, 1476-1482, 2qbi:B, 1476-1482, 2qbk:B, 1476-1482, 2qov:B, 1476-1482, 2qox:B, 1476-1482, 2qoz:B, 1476-1482, 2qp1:B, 1476-1482, 2vhm:B, 1476-1482, 2vhn:B, 1476-1482, 2z4l:B, 1476-1482, 2z4n:B, 1476-1482, 3bbx:B, 1557-1563, 3d5b:A, 1512-1518, 3d5d:A, 1512-1518, 3df2:B, 1476-1482, 3df4:B, 1476-1482
CGAAG
2o43:A, 1118-1124
CUCAA
1k5i:A, 9-15
CUCGC
1c2w:B, 1727-1733
CUGAU
1ffk:0, 1352-1358, 1jj2:0, 1399-1405, 1k73:A, 1399-1405, 1k8a:A, 1399-1405, 1k9m:A, 1399-1405, 1kc8:A, 1399-1405, 1kd1:A, 1399-1405, 1kqs:0, 1399-1405, 1m1k:A, 1399-1405, 1m90:A, 1399-1405, 1n8r:A, 1399-1405, 1nji:A, 1399-1405, 1q7y:A, 1399-1405, 1q81:A, 1399-1405, 1q82:A, 1399-1405, 1q86:A, 1399-1405, 1qvf:0, 1399-1405, 1qvg:0, 1399-1405, 1s1i:3, 1510-1516, 1s72:0, 1399-1405, 1vq4:0, 1399-1405, 1vq5:0, 1399-1405, 1vq6:0, 1399-1405, 1vq7:0, 1399-1405, 1vq8:0, 1399-1405, 1vq9:0, 1399-1405, 1vqk:0, 1399-1405, 1vql:0, 1399-1405, 1vqm:0, 1399-1405, 1vqn:0, 1399-1405, 1vqo:0, 1399-1405, 1vqp:0, 1399-1405, 1w2b:0, 1399-1405, 1yhq:0, 1399-1405, 1yi2:0, 1399-1405, 1yij:0, 1399-1405, 1yit:0, 1399-1405, 1yj9:0, 1399-1405, 1yjn:0, 1399-1405, 1yjw:0, 1399-1405, 2j37:Z, 97-103, 2otj:0, 1399-1405, 2otl:0, 1399-1405, 2qa4:0, 1404-1410, 2qex:0, 1399-1405, 3cc2:0, 1399-1405, 3cc4:0, 1399-1405, 3cc7:0, 1399-1405, 3cce:0, 1399-1405, 3ccj:0, 1399-1405, 3ccl:0, 1399-1405, 3ccm:0, 1399-1405, 3ccq:0, 1399-1405, 3ccr:0, 1399-1405, 3ccs:0, 1399-1405, 3ccu:0, 1399-1405, 3ccv:0, 1399-1405, 3cd6:0, 1399-1405, 3cma:0, 1399-1405, 3cme:0, 1399-1405, 3cpw:0, 1399-1405, 3dkn:F, 16-22
GAAUA
1c2w:B, 611-617
GACGA
2jl5:A, 448-454, 2jl7:A, 448-454
GAGAA
1c2w:B, 1630-1636
GAUGA
1vsp:w, 1196-1202, 2hgj:A, 1196-1202
GGAAC
1kd1:A, 1764-1770, 1m1k:A, 1764-1770, 1n8r:A, 1764-1770, 1q82:A, 1764-1770, 1q86:A, 1764-1770, 1qvg:0, 1764-1770, 1yjn:0, 1764-1770, 3ccr:0, 1764-1770
GGCGA
1c2w:B, 246-252, 1c2w:B, 487-493, 1vs6:B, 487-493, 1vs8:B, 487-493, 2aw4:B, 487-493, 2awb:B, 487-493, 2i2t:B, 487-493, 2i2v:B, 487-493, 2j28:B, 487-493, 2qam:B, 487-493, 2qao:B, 487-493, 2qba:B, 487-493, 2qbc:B, 487-493, 2qbe:B, 487-493, 2qbg:B, 487-493, 2qbi:B, 487-493, 2qbk:B, 487-493, 2qov:B, 487-493, 2qox:B, 487-493, 2qoz:B, 487-493, 2qp1:B, 487-493, 2vhm:B, 487-493, 2vhn:B, 487-493, 2z4l:B, 487-493, 2z4n:B, 487-493, 3bbx:B, 487-493, 3bo0:E, 10-16, 3bo1:E, 10-16, 3df2:B, 487-493, 3df4:B, 487-493
GGGGC
2hgj:A, 2239-2245, 2hgu:A, 2239-2245
GUCGU
1j5a:A, 1279-1285, 1jzx:A, 1279-1285, 1jzy:A, 1279-1285, 1jzz:A, 1279-1285, 1k01:A, 1279-1285, 1njm:0, 1271-1277, 1njn:0, 1271-1277, 1njo:0, 1271-1277, 1njp:0, 1271-1277, 1nkw:0, 1271-1277, 1nwx:0, 1271-1277, 1nwy:0, 1271-1277, 1ond:0, 1271-1277, 1p9x:0, 1247-1253, 1pnu:0, 1287-1293, 1pny:0, 1287-1293, 1sm1:0, 1271-1277, 1vor:B, 1287-1293, 1vou:B, 1287-1293, 1vow:B, 1287-1293, 1voy:B, 1287-1293, 1vp0:B, 1287-1293, 1vsa:w, 1349-1355, 1vsp:w, 1349-1355, 1xbp:0, 1271-1277, 1y69:0, 1271-1277, 1yl3:A, 1348-1354, 1z58:2, 1262-1268, 2aar:0, 1271-1277, 2b66:A, 1348-1354, 2b9n:A, 1348-1354, 2b9p:A, 1348-1354, 2d3o:0, 1271-1277, 2hgq:A, 1348-1354, 2hgu:A, 1348-1354, 2j01:A, 1274-1280, 2j03:A, 1274-1280, 2jl6:A, 1353-1359, 2jl8:A, 1353-1359, 2o43:A, 1271-1277, 2o44:A, 1271-1277, 2o45:A, 1268-1274, 2ogm:0, 1271-1277, 2ogn:0, 1271-1277, 2ogo:0, 1270-1276, 2v47:A, 1274-1280, 2v49:A, 1274-1280, 2zjp:X, 1249-1255, 2zjq:X, 1249-1255, 2zjr:X, 1246-1252, 3cf5:X, 1249-1255, 3d5b:A, 1344-1350, 3d5d:A, 1344-1350, 3dll:X, 1249-1255
UAACG
1u9s:A, 9-15
UAACU
2i2t:B, 641-647, 2i2v:B, 641-647
UAAGU
1vs6:B, 1934-1940, 1vs8:B, 1934-1940, 2aw4:B, 1934-1940, 2awb:B, 1934-1940, 2d3o:0, 1867-1873, 2hgj:A, 1950-1956, 2hgq:A, 1950-1956, 2hgu:A, 1950-1956, 2i2t:B, 1934-1940, 2i2v:B, 1934-1940, 2j01:A, 1867-1873, 2j03:A, 1867-1873, 2j28:B, 1934-1940, 2jl6:A, 1946-1952, 2jl8:A, 1946-1952, 2o45:A, 1864-1870, 2ogm:0, 1867-1873, 2ogn:0, 1867-1873, 2ogo:0, 1866-1872, 2qam:B, 1934-1940, 2qao:B, 1934-1940, 2qba:B, 1934-1940, 2qbc:B, 1934-1940, 2qbe:B, 1934-1940, 2qbg:B, 1934-1940, 2qbi:B, 1934-1940, 2qbk:B, 1934-1940, 2qov:B, 1934-1940, 2qox:B, 1934-1940, 2qoz:B, 1934-1940, 2qp1:B, 1934-1940, 2v47:A, 1867-1873, 2v49:A, 1867-1873, 2z4l:B, 1934-1940, 2z4n:B, 1934-1940, 2zjp:X, 1828-1834, 2zjq:X, 1828-1834, 2zjr:X, 1825-1831, 3bbx:B, 2027-2033, 3cf5:X, 1828-1834, 3d5b:A, 1945-1951, 3d5d:A, 1945-1951, 3deg:J, 7-13, 3df2:B, 1934-1940, 3df4:B, 1934-1940
UAAUC
1vs6:B, 2156-2162, 1vs8:B, 2156-2162, 2aw4:B, 2156-2162, 2awb:B, 2156-2162, 2i2t:B, 2156-2162, 2i2v:B, 2156-2162, 2j28:B, 2156-2162, 2qam:B, 2156-2162, 2qao:B, 2156-2162, 2qba:B, 2156-2162, 2qbc:B, 2156-2162, 2qbe:B, 2156-2162, 2qbg:B, 2156-2162, 2qbi:B, 2156-2162, 2qbk:B, 2156-2162, 2qov:B, 2156-2162, 2qox:B, 2156-2162, 2qoz:B, 2156-2162, 2qp1:B, 2156-2162, 2vhm:B, 2156-2162, 2vhn:B, 2156-2162, 2z4l:B, 2156-2162, 2z4n:B, 2156-2162, 3bbx:B, 2430-2436, 3df2:B, 2156-2162, 3df4:B, 2156-2162
UGCGU
2gdi:X, 18-24, 2gdi:Y, 18-24
UGUUC
1vow:B, 2487-2493, 2gya:0, 2413-2419
UUAAU
1vs6:B, 1308-1314, 1vs8:B, 1308-1314, 2aw4:B, 1308-1314, 2awb:B, 1308-1314, 2gya:0, 1248-1254, 2gyc:0, 1248-1254, 2i2t:B, 1308-1314, 2i2v:B, 1308-1314, 2j28:B, 1308-1314, 2qam:B, 1308-1314, 2qao:B, 1308-1314, 2qba:B, 1308-1314, 2qbc:B, 1308-1314, 2qbe:B, 1308-1314, 2qbg:B, 1308-1314, 2qbi:B, 1308-1314, 2qbk:B, 1308-1314, 2qov:B, 1308-1314, 2qox:B, 1308-1314, 2qoz:B, 1308-1314, 2qp1:B, 1308-1314, 2vhm:B, 1308-1314, 2vhn:B, 1308-1314, 2z4l:B, 1308-1314, 2z4n:B, 1308-1314, 3bbx:B, 1389-1395, 3df2:B, 1308-1314, 3df4:B, 1308-1314
UUAGU
1foq:A, 47-53, 1foq:B, 47-53, 1foq:C, 47-53, 1foq:D, 47-53, 1foq:E, 47-53
UUUUA
1hnw:A, 74-80, 1hnx:A, 74-80, 1hnz:A, 74-80, 1hr0:A, 74-80, 1i96:A, 77-83, 1ibk:A, 74-80, 1ibl:A, 74-80, 1j5e:A, 74-80, 1n32:A, 74-80, 1n33:A, 74-80, 1n34:A, 74-80, 1xmq:A, 74-80, 2b64:A, 74-80, 2b9m:A, 74-80, 2b9o:A, 74-80