Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(008)-Segment cluster 500 (cutoff=3.0 Å)
Cluster size 275 structure(s)
Representative structure 1y69:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNNNN
Cluster members
AACCGUGA
2gyb:A, 994-1003
AAGGUCAA
2d3o:0, 1772-1781
AAUAACAG
3ccs:0, 2344-2353
ACAGCUCU
1yl3:A, 1797-1806
AGCGCAAC
2v46:A, 1082-1091, 2v48:A, 1082-1091
AUGACUGG
2vhp:A, 1475-1484
AUGGGAGU
2vhp:A, 1408-1417
AUUCAACU
2ogm:0, 1108-1117
CAAGUGGA
1njm:0, 1777-1786, 1njn:0, 1777-1786, 1njo:0, 1777-1786, 1njp:0, 1777-1786, 1pnu:0, 1793-1802, 1pny:0, 1793-1802, 1vor:B, 1793-1802, 1vou:B, 1793-1802, 1vow:B, 1793-1802, 1voy:B, 1793-1802, 1vp0:B, 1793-1802, 1y69:0, 1777-1786, 2ogm:0, 1777-1786, 2ogo:0, 1776-1785, 2zjp:X, 1755-1764, 2zjq:X, 1755-1764, 2zjr:X, 1752-1761, 3cf5:X, 1755-1764
CAUAACAG
3ccu:0, 2344-2353
CAUGGGAG
1fka:A, 1369-1378
CCCGUGAC
1i97:A, 1452-1461
CCGAGGGU
1n34:A, 1437-1446
CGAUGGUA
2b66:B, 72-81, 2b9n:B, 72-81, 2b9p:B, 72-81
CUAAUCCC
1n36:A, 158-167
CUCUUGCG
3bbo:A, 1087-1096
GAAACUUG
2gyc:0, 2618-2627
GAAAGACC
1voq:A, 598-607, 1vos:A, 598-607, 1vov:A, 598-607, 1vox:A, 598-607, 1voz:A, 598-607
GAAAUCCC
2vhp:A, 601-610
GAAAUGAA
1njm:0, 1799-1808, 1njn:0, 1799-1808, 1njo:0, 1799-1808, 1njp:0, 1799-1808, 1pnu:0, 1824-1833, 1pny:0, 1824-1833, 1vor:B, 1824-1833, 1vou:B, 1824-1833, 1vow:B, 1824-1833, 1voy:B, 1824-1833, 1vp0:B, 1824-1833, 1y69:0, 1799-1808, 2ogm:0, 1799-1808, 2ogo:0, 1798-1807, 2zjp:X, 1777-1786, 2zjq:X, 1777-1786, 2zjr:X, 1774-1783, 3cf5:X, 1777-1786
GAACGAGC
1j5a:A, 316-325, 1jzx:A, 316-325, 1jzy:A, 316-325, 1jzz:A, 316-325, 1k01:A, 316-325, 1p9x:0, 314-323, 2o44:A, 314-323, 2ogn:0, 314-323
GAAGCCAG
1vor:B, 2699-2708, 1vou:B, 2699-2708, 1voy:B, 2699-2708, 1vp0:B, 2699-2708
GAAGCUAU
1vor:B, 1114-1123
GAAGGGCA
2v47:A, 1326-1335, 2v49:A, 1326-1335
GAGAGUAG
2b66:B, 100-109, 2b9n:B, 100-109, 2b9p:B, 100-109
GAGCCCUA
2uxc:A, 1011-1020, 2vqe:A, 1011-1020
GAGCGGGC
1n34:A, 1394-1403
GAUAACAG
1ffk:0, 2294-2303, 1jj2:0, 2344-2353, 1k73:A, 2344-2353, 1k8a:A, 2344-2353, 1kc8:A, 2344-2353, 1kd1:A, 2344-2353, 1kqs:0, 2344-2353, 1m1k:A, 2344-2353, 1m90:A, 2344-2353, 1n8r:A, 2344-2353, 1nji:A, 2344-2353, 1q81:A, 2344-2353, 1q82:A, 2344-2353, 1q86:A, 2344-2353, 1qvf:0, 2344-2353, 1s72:0, 2344-2353, 1vq4:0, 2344-2353, 1vq5:0, 2344-2353, 1vq6:0, 2344-2353, 1vq7:0, 2344-2353, 1vq8:0, 2344-2353, 1vq9:0, 2344-2353, 1vqk:0, 2344-2353, 1vql:0, 2344-2353, 1vqm:0, 2344-2353, 1vqn:0, 2344-2353, 1vqo:0, 2344-2353, 1vqp:0, 2344-2353, 1vs6:B, 2393-2402, 1vs8:B, 2393-2402, 1vsa:w, 2436-2445, 1vsp:w, 2436-2445, 1w2b:0, 2344-2353, 1yhq:0, 2344-2353, 1yi2:0, 2344-2353, 1yij:0, 2344-2353, 1yit:0, 2344-2353, 1yj9:0, 2344-2353, 1yjn:0, 2344-2353, 1yjw:0, 2344-2353, 1yl3:A, 2422-2431, 2aar:0, 2338-2347, 2aw4:B, 2393-2402, 2awb:B, 2393-2402, 2d3o:0, 2359-2368, 2gya:0, 2308-2317, 2i2t:B, 2393-2402, 2i2v:B, 2393-2402, 2j01:A, 2324-2333, 2j03:A, 2324-2333, 2j28:B, 2393-2402, 2jl6:A, 2403-2412, 2jl8:A, 2403-2412, 2o43:A, 2338-2347, 2ogm:0, 2338-2347, 2ogn:0, 2338-2347, 2ogo:0, 2337-2346, 2otj:0, 2344-2353, 2otl:0, 2344-2353, 2qam:B, 2393-2402, 2qao:B, 2393-2402, 2qba:B, 2393-2402, 2qbc:B, 2393-2402, 2qbe:B, 2393-2402, 2qbg:B, 2393-2402, 2qex:0, 2344-2353, 2qov:B, 2393-2402, 2qox:B, 2393-2402, 2qoz:B, 2393-2402, 2qp1:B, 2393-2402, 2v47:A, 2319-2328, 2v49:A, 2319-2328, 2z4l:B, 2393-2402, 2z4n:B, 2393-2402, 2zjr:X, 2246-2255, 3bbo:A, 2385-2394, 3cc2:0, 2344-2353, 3cc4:0, 2344-2353, 3cce:0, 2344-2353, 3ccl:0, 2344-2353, 3ccm:0, 2344-2353, 3ccv:0, 2344-2353, 3cd6:0, 2344-2353, 3cf5:X, 2249-2258, 3cma:0, 2344-2353, 3cme:0, 2344-2353, 3cpw:0, 2344-2353, 3d5b:A, 2431-2440, 3d5d:A, 2431-2440, 3df2:B, 2393-2402, 3df4:B, 2393-2402, 3dll:X, 2249-2258
GAUAACCG
3ccr:0, 2344-2353
GAUAACUA
2vho:A, 143-152, 2vhp:A, 143-152
GAUAACUG
3ccq:0, 2344-2353
GAUAAUAG
3cc7:0, 2344-2353
GAUACGCU
1fka:A, 609-618
GCCCGUGA
1n34:A, 1448-1457
GGAGCCCU
1hnz:A, 1010-1019, 2vqf:A, 1010-1019
GGCACUCU
1n33:A, 1120-1129, 1xnr:A, 1115-1124, 2hhh:A, 1120-1129
GUCCCACC
2gya:9, 18-27, 2gyc:9, 18-27
UAAUUGAU
1vs6:B, 1835-1844, 1vs8:B, 1835-1844, 2aw4:B, 1835-1844, 2awb:B, 1835-1844, 2i2t:B, 1835-1844, 2i2v:B, 1835-1844, 2j28:B, 1835-1844, 2qam:B, 1835-1844, 2qao:B, 1835-1844, 2qba:B, 1835-1844, 2qbc:B, 1835-1844, 2qbe:B, 1835-1844, 2qbg:B, 1835-1844, 2qbi:B, 1835-1844, 2qbk:B, 1835-1844, 2qov:B, 1835-1844, 2qox:B, 1835-1844, 2qoz:B, 1835-1844, 2qp1:B, 1835-1844, 2vhm:B, 1835-1844, 2vhn:B, 1835-1844, 2z4l:B, 1835-1844, 2z4n:B, 1835-1844, 3bbx:B, 1928-1937, 3df2:B, 1835-1844, 3df4:B, 1835-1844
UAGUAAGG
1j5a:A, 8-17, 1jzx:A, 8-17, 1jzy:A, 8-17, 1jzz:A, 8-17, 1k01:A, 8-17, 1njm:0, 8-17, 1njn:0, 8-17, 1njo:0, 8-17, 1njp:0, 8-17, 1nkw:0, 8-17, 1nwx:0, 8-17, 1nwy:0, 8-17, 1ond:0, 8-17, 1pnu:0, 8-17, 1pny:0, 8-17, 1sm1:0, 8-17, 1xbp:0, 8-17, 2d3o:0, 8-17, 2ogn:0, 8-17, 2ogo:0, 7-16, 2zjp:X, 8-17, 2zjr:X, 8-17, 3cf5:X, 8-17
UCAGGGUG
1n36:A, 19-28
UGAUCGAA
1vs6:B, 1866-1875, 1vs8:B, 1866-1875, 2aw4:B, 1866-1875, 2awb:B, 1866-1875, 2i2t:B, 1866-1875, 2i2v:B, 1866-1875, 2j28:B, 1866-1875, 2qam:B, 1866-1875, 2qao:B, 1866-1875, 2qba:B, 1866-1875, 2qbc:B, 1866-1875, 2qbe:B, 1866-1875, 2qbg:B, 1866-1875, 2qbi:B, 1866-1875, 2qbk:B, 1866-1875, 2qov:B, 1866-1875, 2qox:B, 1866-1875, 2qoz:B, 1866-1875, 2qp1:B, 1866-1875, 2vhm:B, 1866-1875, 2vhn:B, 1866-1875, 2z4l:B, 1866-1875, 2z4n:B, 1866-1875, 3bbx:B, 1959-1968, 3df2:B, 1866-1875, 3df4:B, 1866-1875
UGAUCUAU
3bbo:A, 663-672
UGGGAACU
1vor:B, 153-162, 1vow:B, 153-162, 1vp0:B, 153-162
UGGGUUCA
1nwx:0, 2471-2480, 2o43:A, 2471-2480
UGGUAAGG
1yl3:A, 8-17, 2b66:A, 8-17, 2b9n:A, 8-17, 2b9p:A, 8-17
UGUGUGUU
2gya:0, 237-246