Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(008)-Segment cluster 158 (cutoff=2.5 Å)
Cluster size 123 structure(s)
Representative structure 1n34:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNNNN
Cluster members
AACCGUGA
2gyb:A, 994-1003
AACUGCAU
2vho:A, 624-633
AAGGUCAA
2d3o:0, 1772-1781
AGCCCUAG
2f4v:A, 1012-1021
AUGACUGG
2vhp:A, 1475-1484
AUGGGAGU
2vhp:A, 1408-1417
AUUCAACU
2ogm:0, 1108-1117
CAAGUGGA
1njm:0, 1777-1786, 1njn:0, 1777-1786, 1njo:0, 1777-1786, 1njp:0, 1777-1786, 1pnu:0, 1793-1802, 1pny:0, 1793-1802, 1vor:B, 1793-1802, 1vou:B, 1793-1802, 1vow:B, 1793-1802, 1voy:B, 1793-1802, 1vp0:B, 1793-1802, 2ogm:0, 1777-1786, 2ogo:0, 1776-1785, 2zjp:X, 1755-1764, 2zjq:X, 1755-1764, 2zjr:X, 1752-1761, 3cf5:X, 1755-1764
CAUGGGAG
1fka:A, 1369-1378
CCCGGUGA
1z58:2, 1800-1809
CCCGUGAC
1i97:A, 1452-1461
CCGAGGGU
1n34:A, 1437-1446
CGAUGGUA
2b66:B, 72-81, 2b9n:B, 72-81, 2b9p:B, 72-81
CUCUUGCG
3bbo:A, 1087-1096
GAAAUGAA
1njm:0, 1799-1808, 1njn:0, 1799-1808, 1njo:0, 1799-1808, 1njp:0, 1799-1808, 1pnu:0, 1824-1833, 1pny:0, 1824-1833, 1y69:0, 1799-1808, 2ogm:0, 1799-1808, 2ogo:0, 1798-1807, 2zjp:X, 1777-1786, 2zjq:X, 1777-1786, 2zjr:X, 1774-1783, 3cf5:X, 1777-1786
GAACGAGC
1j5a:A, 316-325, 1jzx:A, 316-325, 1jzy:A, 316-325, 1jzz:A, 316-325, 1k01:A, 316-325, 1p9x:0, 314-323, 2o44:A, 314-323, 2ogn:0, 314-323
GAGCGGGC
1n34:A, 1394-1403
GAUACGCU
1fka:A, 609-618
GCCCGUGA
1n34:A, 1448-1457
GCCGGAAG
1z58:2, 1758-1767
GGAGCCCU
1hnz:A, 1010-1019, 2vqf:A, 1010-1019
GGGCUAAU
1i97:A, 158-167
GGGGGAAC
2hgq:A, 164-173
UAAUUGAU
1vs6:B, 1835-1844, 1vs8:B, 1835-1844, 2aw4:B, 1835-1844, 2awb:B, 1835-1844, 2i2t:B, 1835-1844, 2i2v:B, 1835-1844, 2j28:B, 1835-1844, 2qam:B, 1835-1844, 2qao:B, 1835-1844, 2qba:B, 1835-1844, 2qbc:B, 1835-1844, 2qbe:B, 1835-1844, 2qbg:B, 1835-1844, 2qbi:B, 1835-1844, 2qbk:B, 1835-1844, 2qov:B, 1835-1844, 2qox:B, 1835-1844, 2qoz:B, 1835-1844, 2qp1:B, 1835-1844, 2vhm:B, 1835-1844, 2vhn:B, 1835-1844, 2z4l:B, 1835-1844, 2z4n:B, 1835-1844, 3bbx:B, 1928-1937, 3df2:B, 1835-1844, 3df4:B, 1835-1844
UCACGCCA
1hnz:A, 1383-1392
UCAGGGUG
1n36:A, 19-28
UGACUGGG
1fka:A, 1433-1442
UGAUCGAA
1vs6:B, 1866-1875, 1vs8:B, 1866-1875, 2aw4:B, 1866-1875, 2awb:B, 1866-1875, 2i2t:B, 1866-1875, 2i2v:B, 1866-1875, 2j28:B, 1866-1875, 2qam:B, 1866-1875, 2qao:B, 1866-1875, 2qba:B, 1866-1875, 2qbc:B, 1866-1875, 2qbe:B, 1866-1875, 2qbg:B, 1866-1875, 2qbi:B, 1866-1875, 2qbk:B, 1866-1875, 2qov:B, 1866-1875, 2qox:B, 1866-1875, 2qoz:B, 1866-1875, 2qp1:B, 1866-1875, 2vhm:B, 1866-1875, 2vhn:B, 1866-1875, 2z4l:B, 1866-1875, 3bbx:B, 1959-1968, 3df2:B, 1866-1875, 3df4:B, 1866-1875
UGGGAACU
1vor:B, 153-162, 1vow:B, 153-162, 1vp0:B, 153-162
UUACUGCA
2hgj:A, 2074-2083, 2hgq:A, 2074-2083
UUGGCGGG
1ond:0, 2122-2131, 1pnu:0, 2167-2176, 1pny:0, 2167-2176