Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(008)-Segment cluster 985 (cutoff=1.5 Å)
Cluster size 50 structure(s)
Representative structure 2z4l:B (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NVVNBBNN
Cluster members
AACCGUGA
2gyb:A, 994-1003
ACAGCUCU
1yl3:A, 1797-1806
CAAGUGGA
1njm:0, 1777-1786, 1njn:0, 1777-1786, 1njo:0, 1777-1786, 1njp:0, 1777-1786, 1pnu:0, 1793-1802, 1pny:0, 1793-1802, 1y69:0, 1777-1786, 2ogm:0, 1777-1786, 2ogo:0, 1776-1785, 2zjp:X, 1755-1764, 2zjq:X, 1755-1764, 2zjr:X, 1752-1761, 3cf5:X, 1755-1764
CCCGUGAC
1i97:A, 1452-1461
CCGAGGGU
1n34:A, 1437-1446
GAGCCCUA
2uxc:A, 1011-1020, 2vqe:A, 1011-1020
GAGCGGGC
1n34:A, 1394-1403
GGAGCCCU
1hnz:A, 1010-1019, 2vqf:A, 1010-1019
UAAUUGAU
1vs6:B, 1835-1844, 1vs8:B, 1835-1844, 2aw4:B, 1835-1844, 2awb:B, 1835-1844, 2i2t:B, 1835-1844, 2i2v:B, 1835-1844, 2j28:B, 1835-1844, 2qam:B, 1835-1844, 2qao:B, 1835-1844, 2qba:B, 1835-1844, 2qbc:B, 1835-1844, 2qbe:B, 1835-1844, 2qbg:B, 1835-1844, 2qbi:B, 1835-1844, 2qbk:B, 1835-1844, 2qov:B, 1835-1844, 2qox:B, 1835-1844, 2qoz:B, 1835-1844, 2qp1:B, 1835-1844, 2vhm:B, 1835-1844, 2vhn:B, 1835-1844, 2z4l:B, 1835-1844, 2z4n:B, 1835-1844, 3bbx:B, 1928-1937, 3df2:B, 1835-1844, 3df4:B, 1835-1844
UCACGCCA
1hnz:A, 1383-1392
UGACUGGG
1fka:A, 1433-1442