Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(007)-Segment cluster 1281 (cutoff=3.0 Å)
Cluster size 52 structure(s)
Representative structure 2vho:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNNN
Cluster members
AAAAGAA
2vhp:A, 1423-1431
AAAGAAG
2vho:A, 1424-1432
AAUGUGC
2gy9:A, 980-988
ACGCUAU
1vor:B, 1397-1405, 1voy:B, 1397-1405
AGAAACA
1m5k:B, 19-27, 1m5k:E, 19-27, 1m5o:E, 19-27, 1m5p:E, 19-27, 1m5v:E, 19-27
AGCGAAG
1p9x:0, 1465-1473, 2o45:A, 1486-1494
AUGGUAA
3d5b:A, 2-10, 3d5d:A, 2-10
CAUAGAG
2gcs:B, 101-109, 2gcv:B, 101-109, 2h0s:B, 101-109, 2h0w:B, 101-109, 2h0x:B, 101-109, 2h0z:B, 101-109, 2ho6:B, 101-109, 2ho7:B, 101-109, 2z74:B, 101-109, 2z75:B, 101-109, 3b4a:B, 100-108, 3b4b:B, 101-109, 3b4c:B, 100-108
CGGAGGA
1xbp:0, 686-694
GAAAUCC
3ccj:9, 101-109
GAAUGUG
2gyb:A, 979-987
GACCUAC
1n36:A, 118-126, 2hhh:A, 118-126
GGGACAA
1n36:A, 135-143
GGGCAAC
1cx0:B, 37-45, 1drz:B, 37-45, 1sj3:R, 38-46, 1sj4:R, 38-46, 1sjf:B, 39-47, 1vbx:B, 38-46, 1vby:B, 38-46, 1vbz:B, 38-46, 1vc0:B, 38-46, 1vc5:B, 38-46, 1vc6:B, 37-45, 1vc7:B, 39-47, 2oih:B, 38-46
GGGGUGC
2uxb:A, 994-1002, 2uxc:A, 994-1002
UAGUAAG
1p9x:0, 8-16
UGGGGUG
1i94:A, 996-1004, 1i95:A, 996-1004
UGGUAAG
2hgj:A, 8-16