Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(007)-Segment cluster 1196 (cutoff=2.5 Å)
Cluster size 99 structure(s)
Representative structure 2qp1:B (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNNN
Cluster members
AAAAGAA
2vhp:A, 1423-1431
AAAGAAG
2vho:A, 1424-1432
AACUUGG
1sm1:0, 2080-2088
AAGGCUA
2gyc:0, 1355-1363
ACGCUAU
1vor:B, 1397-1405, 1voy:B, 1397-1405
AGAAACA
1m5k:B, 19-27, 1m5k:E, 19-27, 1m5o:B, 19-27, 1m5o:E, 19-27, 1m5p:B, 19-27, 1m5p:E, 19-27, 1m5v:B, 19-27, 1m5v:E, 19-27
AGAGGGU
1i97:A, 644-652
AGCGAAG
1p9x:0, 1465-1473, 2o45:A, 1486-1494
AUGGUAA
3d5b:A, 2-10, 3d5d:A, 2-10
CACAGGU
1vos:A, 1036-1044, 1vov:A, 1036-1044, 1vox:A, 1036-1044, 1voz:A, 1036-1044
CAUAGAG
2gcs:B, 101-109, 2gcv:B, 101-109, 2h0s:B, 101-109, 2h0w:B, 101-109, 2h0x:B, 101-109, 2h0z:B, 101-109, 2ho6:B, 101-109, 2ho7:B, 101-109, 2z74:B, 101-109, 2z75:B, 101-109, 3b4a:B, 100-108, 3b4b:B, 101-109, 3b4c:B, 100-108
CCGAAGG
1xbp:0, 859-867, 2v47:A, 915-923, 2v49:A, 915-923
CCUGUAG
2o44:A, 818-826
CGGAGGA
1xbp:0, 686-694
GACCGAA
3bbo:A, 1819-1827
GCAUAAC
1vs5:A, 172-180, 1vs7:A, 172-180, 2avy:A, 172-180, 2aw7:A, 172-180, 2i2p:A, 172-180, 2i2u:A, 172-180, 2qal:A, 172-180, 2qan:A, 172-180, 2qbd:A, 172-180, 2qbf:A, 172-180, 2qbh:A, 172-180, 2qbj:A, 172-180, 2qoy:A, 172-180, 2qp0:A, 172-180, 2z4k:A, 172-180, 2z4m:A, 172-180, 3df1:A, 172-180, 3df3:A, 172-180
GCGAAUA
1vs6:B, 897-905, 1vs8:B, 897-905, 2aw4:B, 897-905, 2awb:B, 897-905, 2gya:0, 843-851, 2i2t:B, 897-905, 2i2v:B, 897-905, 2j28:B, 897-905, 2qam:B, 897-905, 2qao:B, 897-905, 2qba:B, 897-905, 2qbc:B, 897-905, 2qbe:B, 897-905, 2qbg:B, 897-905, 2qbi:B, 897-905, 2qbk:B, 897-905, 2qov:B, 897-905, 2qox:B, 897-905, 2qoz:B, 897-905, 2qp1:B, 897-905, 2z4l:B, 897-905, 2z4n:B, 897-905, 3bbx:B, 975-983, 3df2:B, 897-905, 3df4:B, 897-905
GGGACAA
1n36:A, 135-143
GGGGAUG
1z58:2, 104-112
GGGGUGC
2uxb:A, 994-1002, 2uxc:A, 994-1002
GGUAAGA
1vow:B, 2737-2745
UAGUAAG
1p9x:0, 8-16
UCGGGAG
1xbp:0, 1472-1480
UCGGGUU
1sm1:0, 2014-2022, 1xbp:0, 2014-2022, 2ogm:0, 2014-2022, 2ogo:0, 2013-2021
UGGGGUG
1i94:A, 996-1004, 1i95:A, 996-1004
UGGUAAG
2hgj:A, 8-16