Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(006)-Segment cluster 1484 (cutoff=2.5 Å)
Cluster size 118 structure(s)
Representative structure 2d3o:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNNN
Cluster members
AAACGC
2v47:B, 56-63, 2v49:B, 56-63
AGCCCU
1xnr:A, 1007-1014, 2uub:A, 1012-1019
CAAUGG
2f4v:A, 362-369, 3d5a:A, 362-369, 3d5c:A, 362-369
CACAAG
1i97:A, 909-916
CCCGUA
1vs6:B, 334-341, 1vs8:B, 334-341, 1vsa:w, 359-366, 1vsp:w, 359-366, 2aw4:B, 334-341, 2awb:B, 334-341, 2i2t:B, 334-341, 2i2v:B, 334-341, 2j01:A, 347-354, 2j03:A, 347-354, 2j28:B, 334-341, 2jl6:A, 347-354, 2jl8:A, 347-354, 2qam:B, 334-341, 2qao:B, 334-341, 2qba:B, 334-341, 2qbc:B, 334-341, 2qbe:B, 334-341, 2qbg:B, 334-341, 2qbi:B, 334-341, 2qbk:B, 334-341, 2qov:B, 334-341, 2qox:B, 334-341, 2qoz:B, 334-341, 2qp1:B, 334-341, 2vhm:B, 334-341, 2z4l:B, 334-341, 2z4n:B, 334-341, 3bbx:B, 334-341, 3d5b:A, 354-361, 3d5d:A, 354-361, 3df2:B, 334-341, 3df4:B, 334-341
CCUGUA
1j5a:A, 307-314, 1jzx:A, 307-314, 1jzy:A, 307-314, 1jzz:A, 307-314, 1k01:A, 307-314, 1nkw:0, 305-312, 1nwx:0, 305-312, 1nwy:0, 305-312, 1ond:0, 305-312, 1p9x:0, 305-312, 1pnu:0, 305-312, 1pny:0, 305-312, 2aar:0, 305-312, 2d3o:0, 305-312, 2o43:A, 305-312, 2o45:A, 305-312, 2ogm:0, 305-312, 2ogn:0, 305-312, 2ogo:0, 304-311, 2zjp:X, 295-302, 2zjq:X, 295-302, 2zjr:X, 295-302, 3cf5:X, 295-302, 3dll:X, 295-302
CGCAAC
2gyb:A, 1066-1073
GAUAAC
3ccj:0, 2344-2351
GCAACC
1i97:A, 1088-1095, 2b64:A, 1085-1092, 2b9m:A, 1085-1092, 2b9o:A, 1085-1092
GUUGCC
1ffk:9, 21-28, 1k8a:B, 21-28, 1k9m:B, 21-28, 1kd1:B, 21-28, 1kqs:9, 21-28, 1m1k:B, 21-28, 1m90:B, 21-28, 1n8r:B, 21-28, 1s1i:4, 21-28, 1s72:9, 21-28, 1vq4:9, 21-28, 1vq5:9, 21-28, 1vq6:9, 21-28, 1vq7:9, 21-28, 1vq8:9, 21-28, 1vq9:9, 21-28, 1vqk:9, 21-28, 1vql:9, 21-28, 1vqm:9, 21-28, 1vqn:9, 21-28, 1vqo:9, 21-28, 1vqp:9, 21-28, 1yhq:9, 21-28, 1yi2:9, 21-28, 1yij:9, 21-28, 1yit:9, 21-28, 1yj9:9, 21-28, 1yjn:9, 21-28, 1yjw:9, 21-28, 2otj:9, 21-28, 2otl:9, 21-28, 2qex:9, 21-28, 3cc2:9, 21-28, 3cc4:9, 21-28, 3cc7:9, 21-28, 3cce:9, 21-28, 3ccl:9, 21-28, 3ccm:9, 21-28, 3ccq:9, 21-28, 3ccu:9, 21-28, 3ccv:9, 21-28, 3cd6:9, 21-28, 3cma:9, 21-28, 3cme:9, 21-28
UAGACG
1i94:A, 633-640, 2jl5:A, 630-637, 2jl7:A, 630-637