Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(006)-Segment cluster 2815 (cutoff=1.5 Å)
Cluster size 177 structure(s)
Representative structure 3cf5:X (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNDHB
Cluster members
AGGUUU
2b66:A, 2405-2412, 2b9n:A, 2405-2412, 2b9p:A, 2405-2412
CCUAAU
2gya:0, 226-233
CGGAAC
3bwp:A, 302-309
CUGUAG
2v47:A, 865-872, 2v49:A, 865-872
GAAGCC
2d3o:0, 1804-1811
GGCACU
1fjg:A, 1120-1127, 1hnx:A, 1120-1127, 1hr0:A, 1120-1127, 1ibl:A, 1120-1127, 1ibm:A, 1120-1127, 1j5e:A, 1120-1127, 1n32:A, 1120-1127, 1pns:A, 1136-1143, 1pnx:A, 1136-1143, 1s1h:A, 1121-1128, 1xnq:A, 1115-1122, 1yl4:A, 1120-1127, 2b64:A, 1120-1127, 2b9m:A, 1120-1127, 2b9o:A, 1120-1127, 2e5l:A, 1121-1128, 2hgi:A, 1120-1127, 2hgp:A, 1120-1127, 2hgr:A, 1120-1127, 2uu9:A, 1120-1127, 2vqe:A, 1120-1127, 2vqf:A, 1120-1127, 3d5a:A, 1120-1127, 3d5c:A, 1120-1127
GGGUAG
1vs6:B, 856-863, 1vs8:B, 856-863, 2aw4:B, 856-863, 2awb:B, 856-863, 2gya:0, 792-799, 2i2t:B, 856-863, 2i2v:B, 856-863, 2j28:B, 856-863, 2qam:B, 856-863, 2qao:B, 856-863, 2qba:B, 856-863, 2qbc:B, 856-863, 2qbe:B, 856-863, 2qbg:B, 856-863, 2qbi:B, 856-863, 2qbk:B, 856-863, 2qov:B, 856-863, 2qox:B, 856-863, 2qoz:B, 856-863, 2qp1:B, 856-863, 2z4l:B, 856-863, 2z4n:B, 856-863, 3bbx:B, 856-863, 3df2:B, 856-863, 3df4:B, 856-863
UGGAUG
1j5a:A, 24-31, 1jzx:A, 24-31, 1jzy:A, 24-31, 1jzz:A, 24-31, 1k01:A, 24-31, 1nkw:0, 24-31, 1nwx:0, 24-31, 1nwy:0, 24-31, 1ond:0, 24-31, 1vs6:B, 24-31, 1vs8:B, 24-31, 1xbp:0, 24-31, 1y69:0, 24-31, 1yl3:A, 24-31, 1z58:2, 24-31, 2aar:0, 24-31, 2aw4:B, 24-31, 2awb:B, 24-31, 2d3o:0, 24-31, 2gya:0, 9-16, 2gyc:0, 9-16, 2i2t:B, 24-31, 2i2v:B, 24-31, 2j01:A, 19-26, 2j03:A, 19-26, 2j28:B, 24-31, 2jl6:A, 19-26, 2jl8:A, 19-26, 2o43:A, 24-31, 2o44:A, 24-31, 2o45:A, 24-31, 2ogm:0, 24-31, 2ogn:0, 24-31, 2ogo:0, 23-30, 2qam:B, 24-31, 2qao:B, 24-31, 2qba:B, 24-31, 2qbc:B, 24-31, 2qbe:B, 24-31, 2qbg:B, 24-31, 2qbi:B, 24-31, 2qbk:B, 24-31, 2qov:B, 24-31, 2qox:B, 24-31, 2qoz:B, 24-31, 2qp1:B, 24-31, 2vhm:B, 24-31, 2vhn:B, 24-31, 2z4l:B, 24-31, 2z4n:B, 24-31, 2zjp:X, 24-31, 2zjq:X, 24-31, 2zjr:X, 24-31, 3bbx:B, 24-31, 3cf5:X, 24-31, 3d5b:A, 19-26, 3d5d:A, 19-26, 3df2:B, 24-31, 3df4:B, 24-31, 3dll:X, 24-31
UGGAUU
1ffk:0, 12-19, 1jj2:0, 12-19, 1k73:A, 12-19, 1k8a:A, 12-19, 1k9m:A, 12-19, 1kc8:A, 12-19, 1kd1:A, 12-19, 1kqs:0, 12-19, 1m1k:A, 12-19, 1m90:A, 12-19, 1n8r:A, 12-19, 1nji:A, 12-19, 1q7y:A, 12-19, 1q81:A, 12-19, 1q82:A, 12-19, 1q86:A, 12-19, 1qvf:0, 12-19, 1qvg:0, 12-19, 1s1i:3, 12-19, 1s72:0, 12-19, 1vq4:0, 12-19, 1vq5:0, 12-19, 1vq6:0, 12-19, 1vq7:0, 12-19, 1vq8:0, 12-19, 1vq9:0, 12-19, 1vqk:0, 12-19, 1vql:0, 12-19, 1vqm:0, 12-19, 1vqn:0, 12-19, 1vqo:0, 12-19, 1vqp:0, 12-19, 1w2b:0, 12-19, 1yhq:0, 12-19, 1yi2:0, 12-19, 1yij:0, 12-19, 1yit:0, 12-19, 1yj9:0, 12-19, 1yjn:0, 12-19, 1yjw:0, 12-19, 2otj:0, 12-19, 2otl:0, 12-19, 2qa4:0, 12-19, 2qex:0, 12-19, 3cc2:0, 12-19, 3cc4:0, 12-19, 3cc7:0, 12-19, 3cce:0, 12-19, 3ccj:0, 12-19, 3ccl:0, 12-19, 3ccm:0, 12-19, 3ccq:0, 12-19, 3ccr:0, 12-19, 3ccs:0, 12-19, 3ccu:0, 12-19, 3ccv:0, 12-19, 3cd6:0, 12-19, 3cma:0, 12-19, 3cme:0, 12-19, 3cpw:0, 12-19