Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(006)-Segment cluster 2370 (cutoff=1.5 Å)
Cluster size 80 structure(s)
Representative structure 2v46:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNVNNN
Cluster members
ACCUGG
1i97:A, 718-725
AGAAGU
2qal:A, 1426-1433, 2qan:A, 1426-1433, 2qou:A, 1426-1433, 2qow:A, 1426-1433
AUGGGA
2uxb:A, 1390-1397
CACUUU
2vhp:A, 1462-1469
CCGUGA
1n33:A, 1450-1457, 1n36:A, 1450-1457
CGAAGU
2uxd:A, 1386-1393, 3bbn:A, 1374-1381
CGCCGA
1n36:A, 1435-1442
CGGCCU
2vhn:B, 1097-1104
GAAGUC
2f4v:A, 1409-1416
GACUGG
2uxb:A, 1454-1461
GAGCGG
1n33:A, 1394-1401, 1n36:A, 1394-1401
GCAGGG
2hgq:A, 1499-1506, 2hgu:A, 1499-1506
GCCAAG
1gid:A, 112-119, 1gid:B, 112-119, 1hr2:A, 111-118, 1hr2:B, 112-119
GGAAUU
2v46:A, 651-658
GGAGCG
1xbp:0, 1139-1146, 2o44:A, 1782-1789
GGGAAG
2vhn:B, 1019-1026
GGGUUU
2ogn:0, 2016-2023
UAAAUA
1j5a:A, 394-401, 1jzx:A, 394-401, 1jzy:A, 394-401, 1jzz:A, 394-401, 1k01:A, 394-401, 1vs6:B, 426-433, 2aw4:B, 426-433, 2i2t:B, 426-433, 2i2v:B, 426-433, 2qam:B, 426-433, 2qao:B, 426-433, 2qba:B, 426-433, 2qbc:B, 426-433, 2qbe:B, 426-433, 2qbg:B, 426-433, 2qbi:B, 426-433, 2qbk:B, 426-433, 2qov:B, 426-433, 2qox:B, 426-433, 2qoz:B, 426-433, 2qp1:B, 426-433, 2z4l:B, 426-433, 2z4n:B, 426-433, 2zjp:X, 367-374, 2zjq:X, 367-374, 3cf5:X, 367-374, 3df2:B, 426-433, 3df4:B, 426-433, 3dll:X, 367-374
UAAGUA
2j01:A, 442-449, 2j03:A, 442-449, 2jl6:A, 442-449, 2jl8:A, 442-449, 2v47:A, 442-449, 2v49:A, 442-449, 3d5b:A, 449-456, 3d5d:A, 449-456
UCAGAC
2ogm:0, 1463-1470
UCGGGA
1njm:0, 1472-1479, 1njn:0, 1472-1479, 1njo:0, 1472-1479, 1njp:0, 1472-1479, 1pnu:0, 1488-1495, 1pny:0, 1488-1495
UGGAUG
1njm:0, 24-31, 1njn:0, 24-31, 1njo:0, 24-31, 1njp:0, 24-31, 1pnu:0, 24-31, 1pny:0, 24-31, 1sm1:0, 24-31
UUCUAA
2aar:0, 2089-2096