Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(005)-Segment cluster 376 (cutoff=3.0 Å)
Cluster size 371 structure(s)
Representative structure 1k8a:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NNNNN
Cluster members
AAAAA
1hnw:A, 1261-1267, 1hnx:A, 1261-1267, 1hr0:A, 1261-1267, 1i95:A, 1264-1270, 1ibk:A, 1261-1267, 1j5e:A, 1261-1267, 1n33:A, 1261-1267, 1pns:A, 1277-1283, 1pnx:A, 1277-1283, 1s1h:A, 1262-1268, 1xmq:A, 1256-1262, 1xnr:A, 1256-1262, 1yl4:A, 1261-1267, 2b64:A, 1261-1267, 2b9m:A, 1261-1267, 2b9o:A, 1261-1267, 2hgr:A, 1261-1267, 2j00:A, 1261-1267, 2j02:A, 1261-1267, 2jl5:A, 1261-1267, 2jl7:A, 1261-1267, 2ow8:y, 1261-1267, 2qnh:y, 1261-1267, 2uua:A, 1261-1267, 2uub:A, 1261-1267, 2uuc:A, 1261-1267, 2uxc:A, 1261-1267, 2uxd:A, 1239-1245, 2v46:A, 1261-1267, 2v48:A, 1261-1267, 2vqe:A, 1261-1267, 2vqf:A, 1261-1267, 3d5a:A, 1261-1267, 3d5c:A, 1261-1267
AGACA
1vs6:B, 924-930, 1vs8:B, 924-930, 2aw4:B, 924-930, 2awb:B, 924-930, 2gya:0, 869-875, 2i2t:B, 924-930, 2i2v:B, 924-930, 2j28:B, 924-930, 2qam:B, 924-930, 2qao:B, 924-930, 2qba:B, 924-930, 2qbc:B, 924-930, 2qbe:B, 924-930, 2qbg:B, 924-930, 2qbi:B, 924-930, 2qbk:B, 924-930, 2qov:B, 924-930, 2qox:B, 924-930, 2qoz:B, 924-930, 2qp1:B, 924-930, 2vhm:B, 924-930, 2z4l:B, 924-930, 2z4n:B, 924-930, 3bbx:B, 1002-1008, 3df2:B, 924-930, 3df4:B, 924-930
AGAUC
2fmt:C, 44-50, 2fmt:D, 44-50, 3cw5:A, 44-50, 3cw6:A, 44-50
AGGCA
1i94:A, 342-348, 1i96:A, 342-348
AGGUC
1ehz:A, 43-49, 1evv:A, 43-49, 1fcw:A, 43-49, 1fcw:B, 43-49, 1fcw:C, 43-49, 1fcw:D, 43-49, 1fcw:E, 43-49, 1ffy:T, 44-50, 1gax:C, 42-48, 1gax:D, 42-48, 1gix:B, 43-49, 1gix:C, 43-49, 1i9v:A, 43-49, 1ivs:C, 42-48, 1ivs:D, 42-48, 1jgo:B, 43-49, 1jgo:C, 43-49, 1jgp:B, 43-49, 1jgp:C, 43-49, 1jgq:B, 43-49, 1jgq:C, 43-49, 1mj1:C, 43-49, 1mj1:D, 43-49, 1ml5:B, 43-49, 1ob2:B, 43-49, 1ob5:B, 43-49, 1ob5:D, 43-49, 1ob5:F, 43-49, 1pns:V, 43-49, 1pns:W, 43-49, 1qu2:T, 44-50, 1qu3:T, 44-50, 1sz1:E, 43-49, 1sz1:F, 43-49, 1tn2:A, 43-49, 1tra:A, 43-49, 1ttt:D, 43-49, 1ttt:E, 43-49, 1ttt:F, 43-49, 1yl4:B, 43-49, 1yl4:C, 43-49, 1zo1:F, 43-49, 1zo3:A, 43-49, 1zo3:B, 43-49, 2csx:C, 44-50, 2csx:D, 44-50, 2ct8:C, 44-50, 2ct8:D, 44-50, 2gy9:U, 43-49, 2gy9:V, 43-49, 2gy9:W, 43-49, 2gyb:U, 43-49, 2gyb:V, 43-49, 2gyb:W, 43-49, 2hgi:C, 43-49, 2hgr:C, 43-49, 2j00:V, 44-50, 2ow8:0, 43-49, 2qnh:2, 43-49, 3d5a:Y, 44-50, 3d5a:Z, 44-50, 3d5c:Y, 44-50, 3d5c:Z, 44-50, 3deg:A, 43-49, 3deg:B, 44-50, 486d:C, 43-49, 4tna:A, 43-49, 4tra:A, 43-49, 6tna:A, 43-49
AGGUU
2azx:C, 42-48, 2azx:D, 42-48, 2dr2:B, 42-48
AGUGA
1j5a:A, 893-899, 1jzx:A, 893-899, 1jzy:A, 893-899, 1jzz:A, 893-899, 1k01:A, 893-899, 1njm:0, 885-891, 1njn:0, 885-891, 1njo:0, 885-891, 1njp:0, 885-891, 1p9x:0, 862-868, 1pnu:0, 901-907, 1pny:0, 901-907, 1sm1:0, 885-891, 2d3o:0, 885-891, 2hgj:A, 963-969, 2hgu:A, 963-969, 2o43:A, 885-891, 2ogo:0, 884-890
AUAAA
1vs5:A, 1280-1286, 1vs7:A, 1280-1286, 2avy:A, 1280-1286, 2aw7:A, 1280-1286, 2i2p:A, 1280-1286, 2i2u:A, 1280-1286, 2qal:A, 1280-1286, 2qan:A, 1280-1286, 2qb9:A, 1280-1286, 2qbb:A, 1280-1286, 2qbd:A, 1280-1286, 2qbf:A, 1280-1286, 2qbh:A, 1280-1286, 2qbj:A, 1280-1286, 2qou:A, 1280-1286, 2qow:A, 1280-1286, 2qoy:A, 1280-1286, 2qp0:A, 1280-1286, 2z4k:A, 1280-1286, 2z4m:A, 1280-1286, 3df1:A, 1280-1286, 3df3:A, 1280-1286
AUGUC
1j1u:B, 44-50, 1yfg:A, 42-48
AUUCC
1ffk:0, 1004-1010, 1jj2:0, 1008-1014, 1k73:A, 1008-1014, 1k8a:A, 1008-1014, 1k9m:A, 1008-1014, 1kc8:A, 1008-1014, 1kd1:A, 1008-1014, 1kqs:0, 1008-1014, 1m1k:A, 1008-1014, 1m90:A, 1008-1014, 1n8r:A, 1008-1014, 1nji:A, 1008-1014, 1q7y:A, 1008-1014, 1q81:A, 1008-1014, 1q82:A, 1008-1014, 1q86:A, 1008-1014, 1qvf:0, 1008-1014, 1qvg:0, 1008-1014, 1s1i:3, 1104-1110, 1s72:0, 1008-1014, 1vq4:0, 1008-1014, 1vq5:0, 1008-1014, 1vq6:0, 1008-1014, 1vq7:0, 1008-1014, 1vq8:0, 1008-1014, 1vq9:0, 1008-1014, 1vqk:0, 1008-1014, 1vql:0, 1008-1014, 1vqm:0, 1008-1014, 1vqn:0, 1008-1014, 1vqo:0, 1008-1014, 1vqp:0, 1008-1014, 1w2b:0, 1008-1014, 1yhq:0, 1008-1014, 1yi2:0, 1008-1014, 1yij:0, 1008-1014, 1yit:0, 1008-1014, 1yj9:0, 1008-1014, 1yjn:0, 1008-1014, 1yjw:0, 1008-1014, 2otj:0, 1008-1014, 2otl:0, 1008-1014, 2qa4:0, 1007-1013, 2qex:0, 1008-1014, 3cc2:0, 1008-1014, 3cc4:0, 1008-1014, 3cc7:0, 1008-1014, 3cce:0, 1008-1014, 3ccj:0, 1008-1014, 3ccl:0, 1008-1014, 3ccm:0, 1008-1014, 3ccq:0, 1008-1014, 3ccr:0, 1008-1014, 3ccs:0, 1008-1014, 3ccu:0, 1008-1014, 3ccv:0, 1008-1014, 3cd6:0, 1008-1014, 3cma:0, 1008-1014, 3cme:0, 1008-1014, 3cpw:0, 1008-1014
CAACU
2vhm:B, 1754-1760, 2vhn:B, 1754-1760
CAGGA
2b66:A, 1076-1082, 2b9n:A, 1076-1082, 2b9p:A, 1076-1082
CCAAA
2b64:A, 194-200, 2b9m:A, 194-200, 2b9o:A, 194-200
CGAAA
1c2w:B, 672-678, 1vor:B, 779-785, 1vou:B, 779-785, 1vow:B, 779-785, 1voy:B, 779-785, 1vp0:B, 779-785, 1y69:0, 779-785, 2aar:0, 779-785, 2vhm:B, 816-822
CGAAG
1xbp:0, 1491-1497, 2ogn:0, 1491-1497
CGACC
1yhq:0, 282-288, 1yi2:0, 282-288, 1yij:0, 282-288, 1yit:0, 282-288, 1yj9:0, 282-288, 1yjn:0, 282-288, 1yjw:0, 282-288, 3cc2:0, 282-288, 3cc4:0, 282-288, 3cc7:0, 282-288, 3cce:0, 282-288, 3ccj:0, 282-288, 3ccl:0, 282-288, 3ccm:0, 282-288, 3ccq:0, 282-288, 3ccr:0, 282-288, 3ccs:0, 282-288, 3ccu:0, 282-288, 3ccv:0, 282-288, 3cd6:0, 282-288, 3cma:0, 282-288, 3cme:0, 282-288
CGAGG
1j5a:A, 2784-2790, 1jzx:A, 2784-2790, 1jzy:A, 2784-2790, 1jzz:A, 2784-2790, 1k01:A, 2784-2790
CUGAA
1vs6:B, 2752-2758, 1vs8:B, 2752-2758, 2aw4:B, 2752-2758, 2awb:B, 2752-2758, 2i2t:B, 2752-2758, 2i2v:B, 2752-2758, 2j28:B, 2752-2758, 2qam:B, 2752-2758, 2qao:B, 2752-2758, 2qba:B, 2752-2758, 2qbc:B, 2752-2758, 2qbe:B, 2752-2758, 2qbg:B, 2752-2758, 2qbi:B, 2752-2758, 2qbk:B, 2752-2758, 2qov:B, 2752-2758, 2qox:B, 2752-2758, 2qoz:B, 2752-2758, 2qp1:B, 2752-2758, 2z4l:B, 2752-2758, 2z4n:B, 2752-2758, 3df2:B, 2752-2758, 3df4:B, 2752-2758
GAAGC
1yl3:A, 321-327
GACGA
2b64:A, 1163-1169, 2b9o:A, 1163-1169
GCGGA
2gya:0, 2585-2591
GCUGA
1vsa:w, 870-876, 1vsp:w, 870-876, 1yl3:A, 869-875, 2b66:A, 869-875, 2b9n:A, 869-875, 2b9p:A, 869-875, 2hgj:A, 869-875, 2hgq:A, 869-875, 2hgu:A, 869-875, 2j01:A, 853-859, 2j03:A, 853-859, 2jl6:A, 880-886, 2jl8:A, 880-886, 3d5b:A, 865-871, 3d5d:A, 865-871
GGGGC
1h4q:T, 41-47, 1h4s:T, 41-47
GGGUC
2k4c:A, 43-49
GGGUG
1hnx:A, 995-1001, 1hr0:A, 995-1001, 1j5e:A, 995-1001, 1pns:A, 1015-1021, 1pnx:A, 1015-1021, 1yl4:A, 995-1001, 2b64:A, 995-1001, 2b9m:A, 995-1001, 2b9o:A, 995-1001, 2hgi:A, 995-1001
GGUCG
2v47:A, 275-281, 2v49:A, 275-281
GGUGC
1ibl:A, 996-1002
GUGUC
1eiy:C, 43-49, 2hgi:D, 43-49, 2hgp:B, 43-49, 2hgp:C, 43-49, 2hgp:D, 43-49, 2hgr:D, 43-49, 2iy5:T, 43-49, 2j02:W, 43-49, 2jl5:V, 43-49, 2jl7:V, 43-49, 2ow8:z, 43-49, 3bbv:z, 43-49
UAACA
2der:C, 44-50
UCGAG
1voy:B, 1068-1074
UGCAC
1nkw:0, 2734-2740, 1nwx:0, 2734-2740, 1nwy:0, 2734-2740, 1ond:0, 2733-2739, 2o43:A, 2734-2740, 2o45:A, 2719-2725, 2ogo:0, 2733-2739
UGGUC
3eph:E, 41-47, 3epj:E, 41-47, 3epk:E, 41-47, 3epl:E, 41-47
UUUAC
2du5:D, 42-48, 2du6:D, 42-48