Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(005)-Segment cluster 233 (cutoff=1.0 Å)
Cluster size 70 structure(s)
Representative structure 1j5a:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence MRNVV
Cluster members
GAUAA
1vs5:A, 143-149, 1vs7:A, 143-149, 2avy:A, 143-149, 2aw7:A, 143-149, 2i2p:A, 143-149, 2i2u:A, 143-149, 2qal:A, 143-149, 2qan:A, 143-149, 2qb9:A, 143-149, 2qbb:A, 143-149, 2qbd:A, 143-149, 2qbf:A, 143-149, 2qbh:A, 143-149, 2qbj:A, 143-149, 2qou:A, 143-149, 2qow:A, 143-149, 2qoy:A, 143-149, 2qp0:A, 143-149, 2z4k:A, 143-149, 2z4m:A, 143-149, 3df1:A, 143-149, 3df3:A, 143-149
GGGCC
1n34:A, 63-69
GGUGC
1njm:0, 700-706, 1njn:0, 700-706, 1njo:0, 700-706, 1njp:0, 700-706, 1sm1:0, 700-706, 1xbp:0, 700-706, 1z58:2, 694-700, 2d3o:0, 700-706, 2o43:A, 700-706, 2ogn:0, 700-706, 2ogo:0, 699-705
UGAAA
1j5a:A, 670-676, 1jzx:A, 670-676, 1jzy:A, 670-676, 1jzz:A, 670-676, 1k01:A, 670-676, 1njm:0, 665-671, 1njn:0, 665-671, 1njo:0, 665-671, 1njp:0, 665-671, 1nkw:0, 665-671, 1nwx:0, 665-671, 1nwy:0, 665-671, 1ond:0, 665-671, 1p9x:0, 642-648, 1pnu:0, 665-671, 1pny:0, 665-671, 1sm1:0, 665-671, 1y69:0, 665-671, 2aar:0, 665-671, 2d3o:0, 665-671, 2o43:A, 665-671, 2o44:A, 665-671, 2o45:A, 665-671, 2ogm:0, 665-671, 2ogn:0, 665-671, 2ogo:0, 664-670, 2zjp:X, 643-649, 2zjq:X, 643-649, 2zjr:X, 643-649, 3cf5:X, 643-649, 3dll:X, 643-649
UGCCA
1ykq:B, 11-17, 1ykv:B, 11-17, 1ykv:D, 11-17
UGCCG
1yls:B, 11-17, 1yls:D, 11-17