Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(004)-Segment cluster 3440 (cutoff=2.0 Å)
Cluster size 57 structure(s)
Representative structure 2o43:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence DNND
Cluster members
AAAU
1u6b:B, 43-48, 1zzn:B, 43-48, 3bo2:B, 43-48, 3bo3:B, 43-48, 3bo4:B, 43-48
ACCA
3bbo:A, 676-681
AGUU
1nwx:0, 2535-2540, 1nwy:0, 2535-2540, 1p9x:0, 2510-2515, 2o43:A, 2535-2540, 2ogm:0, 2535-2540, 2ogn:0, 2535-2540, 2zjp:X, 2446-2451
AUGU
2ogn:0, 108-113
GAAA
1j5a:A, 1293-1298, 1jzx:A, 1293-1298, 1jzy:A, 1293-1298, 1jzz:A, 1293-1298, 1k01:A, 1293-1298
GAAG
2qba:B, 1526-1531, 2qbc:B, 1526-1531, 2qp1:B, 1526-1531
GAGG
1njm:0, 2777-2782, 1njn:0, 2777-2782, 1njo:0, 2777-2782, 1njp:0, 2777-2782, 1pnu:0, 2821-2826, 1pny:0, 2821-2826, 1yl3:A, 2863-2868, 2aar:0, 2777-2782, 2d3o:0, 2798-2803, 2hgj:A, 2877-2882, 2hgq:A, 2877-2882, 2hgu:A, 2877-2882, 2o43:A, 2777-2782, 2o45:A, 2762-2767, 2ogn:0, 2777-2782, 2ogo:0, 2776-2781, 2zjp:X, 2688-2693, 2zjq:X, 2688-2693, 2zjr:X, 2685-2690, 3cf5:X, 2688-2693, 3dll:X, 2688-2693
GAUG
1u6b:B, 34-39, 1zzn:B, 34-39, 3bo2:B, 34-39, 3bo3:B, 34-39, 3bo4:B, 34-39
GUUA
1vsa:w, 1363-1368, 2b66:A, 1362-1367, 2b9n:A, 1362-1367, 2b9p:A, 1362-1367
UAAU
2rkj:C, 36-41, 2rkj:G, 36-41, 2rkj:K, 36-41, 2rkj:O, 36-41
UUUG
1z58:2, 2113-2118