Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(004)-Hairpin cluster 1239 (cutoff=1.0 Å)
Cluster size 144 structure(s)
Representative structure 1vq9:0 (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence DKVN
Cluster members
ACCA
1j5a:A, 2601-2606, 1jzx:A, 2601-2606, 1jzy:A, 2601-2606, 1jzz:A, 2601-2606, 1k01:A, 2601-2606, 1njm:0, 2593-2598, 1njn:0, 2593-2598, 1njo:0, 2593-2598, 1njp:0, 2593-2598, 1nkw:0, 2593-2598, 1nwx:0, 2593-2598, 1nwy:0, 2593-2598, 1ond:0, 2592-2597, 1p9x:0, 2568-2573, 1pnu:0, 2637-2642, 1pny:0, 2637-2642, 1sm1:0, 2593-2598, 1xbp:0, 2593-2598, 1y69:0, 2593-2598, 1z58:2, 2572-2577, 2aar:0, 2593-2598, 2d3o:0, 2614-2619, 2o43:A, 2593-2598, 2o44:A, 2593-2598, 2o45:A, 2581-2586, 2ogm:0, 2593-2598, 2ogn:0, 2593-2598, 2ogo:0, 2592-2597, 2zjp:X, 2504-2509, 2zjq:X, 2504-2509, 2zjr:X, 2501-2506, 3cf5:X, 2504-2509, 3dll:X, 2504-2509
GAAC
3bwp:A, 348-353, 3eog:A, 366-371, 3eoh:A, 365-370
GAGA
1ffk:0, 2550-2555, 1jj2:0, 2601-2606, 1k73:A, 2601-2606, 1k8a:A, 2601-2606, 1k9m:A, 2601-2606, 1kc8:A, 2601-2606, 1kd1:A, 2601-2606, 1kqs:0, 2601-2606, 1m1k:A, 2601-2606, 1m90:A, 2601-2606, 1n8r:A, 2601-2606, 1nji:A, 2601-2606, 1q7y:A, 2601-2606, 1q81:A, 2601-2606, 1q82:A, 2601-2606, 1q86:A, 2601-2606, 1qvf:0, 2601-2606, 1qvg:0, 2601-2606, 1s1i:3, 2917-2922, 1s72:0, 2601-2606, 1vq4:0, 2601-2606, 1vq5:0, 2601-2606, 1vq6:0, 2601-2606, 1vq7:0, 2601-2606, 1vq8:0, 2601-2606, 1vq9:0, 2601-2606, 1vqk:0, 2601-2606, 1vql:0, 2601-2606, 1vqm:0, 2601-2606, 1vqn:0, 2601-2606, 1vqo:0, 2601-2606, 1vqp:0, 2601-2606, 1w2b:0, 2601-2606, 1yhq:0, 2601-2606, 1yi2:0, 2601-2606, 1yij:0, 2601-2606, 1yit:0, 2601-2606, 1yj9:0, 2601-2606, 1yjn:0, 2601-2606, 1yjw:0, 2601-2606, 2otj:0, 2601-2606, 2otl:0, 2601-2606, 2qa4:0, 2606-2611, 2qex:0, 2601-2606, 3cc2:0, 2601-2606, 3cc4:0, 2601-2606, 3cc7:0, 2601-2606, 3cce:0, 2601-2606, 3ccj:0, 2601-2606, 3ccl:0, 2601-2606, 3ccm:0, 2601-2606, 3ccq:0, 2601-2606, 3ccr:0, 2601-2606, 3ccs:0, 2601-2606, 3ccu:0, 2601-2606, 3ccv:0, 2601-2606, 3cd6:0, 2601-2606, 3cma:0, 2601-2606, 3cme:0, 2601-2606, 3cpw:0, 2601-2606
GCAU
2gyc:0, 2174-2179
GCCA
1vs6:B, 2648-2653, 1vs8:B, 2648-2653, 2aw4:B, 2648-2653, 2awb:B, 2648-2653, 2gya:0, 2559-2564, 2gyc:0, 2559-2564, 2i2t:B, 2648-2653, 2i2v:B, 2648-2653, 2j28:B, 2648-2653, 2qam:B, 2648-2653, 2qao:B, 2648-2653, 2qba:B, 2648-2653, 2qbc:B, 2648-2653, 2qbe:B, 2648-2653, 2qbg:B, 2648-2653, 2qbi:B, 2648-2653, 2qbk:B, 2648-2653, 2qov:B, 2648-2653, 2qox:B, 2648-2653, 2qoz:B, 2648-2653, 2qp1:B, 2648-2653, 2z4l:B, 2648-2653, 2z4n:B, 2648-2653, 3bbx:B, 2931-2936, 3df2:B, 2648-2653, 3df4:B, 2648-2653
GCCC
1u6b:B, 67-72, 1zzn:B, 67-72, 3bbo:A, 2640-2645, 3bo2:B, 67-72, 3bo3:B, 67-72
UACG
1c2w:B, 1533-1538
UCCA
1vsa:w, 2691-2696, 1vsp:w, 2691-2696, 1yl3:A, 2677-2682, 2b66:A, 2619-2624, 2b9n:A, 2619-2624, 2b9p:A, 2619-2624, 2hgj:A, 2691-2696, 2hgq:A, 2691-2696, 2hgu:A, 2691-2696, 2j01:A, 2579-2584, 2j03:A, 2579-2584, 2jl6:A, 2658-2663, 2jl8:A, 2658-2663, 3d5b:A, 2686-2691, 3d5d:A, 2686-2691