Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
RLooM: RNA Loop Modeling based on homology and geometric constraints - Loop Database
Current Database Version 12-19-08 (sion)
Browse Database
Hairpins (13,085) Single Strand Segments (46,361) Internal Loops (17,133) Multiloops (5,756)

11-branched multiloops

Length #structures
Small sets (size < 50)
10-9-18-15-1-2-13-2-14-33-8 (6) 15-5-10-8-11-11-3-25-21-9-16 (6) 6-7-18-14-0-2-33-14-18-6-4 (6) 8-9-18-15-1-2-13-2-4-19-6 (6) 9-9-18-15-1-2-13-2-4-19-7 (6) 9-9-18-15-2-3-13-2-4-19-7 (6)
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Sequence-based queries may include NC-IUB ambiguity codes. Internal loops and multibranched loops can be searched by separating the individual loop segments with a '-' character.



Single strand search:




For a query sequence of N bases, the input range is [0,N]. The default value of 0 will be used when ambiguity codes are present in the query sequence or the input is negative. Similarly, N will be used if the input is larger than the length of the query sequence.

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Enter a 4-character pdb id. The search may be restricted to an individual chain, by attaching ':chain-id' (e.g., 2tra:A), with '%' matching any chain.

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