Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
RLooM: RNA Loop Modeling based on homology and geometric constraints - Loop Database
Current Database Version 12-19-08 (sion)
Browse Database
Hairpins (13,085) Single Strand Segments (46,361) Internal Loops (17,133) Multiloops (5,756)

8-branched multiloops

Length #structures
2-2-0-17-29-1-13-13 84
Small sets (size < 50)
10-5-1-1-8-23-3-9 (18) 14-18-3-2-4-3-21-3 (6) 2-16-17-5-14-1-13-1 (18) 2-2-0-41-14-1-13-13 (6) 2-2-1-21-8-14-24-13 (6) 2-4-32-38-8-31-12-15 (6) 20-18-3-2-4-3-20-9 (6) 3-2-0-17-29-1-13-14 (12) 3-2-1-21-8-14-24-14 (6) 3-4-1-17-35-7-13-13 (6) 4-2-0-17-29-1-13-15 (6) 4-4-0-17-29-1-13-13 (12) 6-2-0-17-29-1-13-19 (6) 6-7-18-7-31-14-31-4 (6) 6-7-18-7-32-15-31-4 (6) 6-9-20-7-31-14-28-4 (6) 8-4-0-24-11-3-2-5 (6) 8-9-18-7-31-14-35-6 (12)
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Sequence-based queries may include NC-IUB ambiguity codes. Internal loops and multibranched loops can be searched by separating the individual loop segments with a '-' character.



Single strand search:




For a query sequence of N bases, the input range is [0,N]. The default value of 0 will be used when ambiguity codes are present in the query sequence or the input is negative. Similarly, N will be used if the input is larger than the length of the query sequence.

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Enter a 4-character pdb id. The search may be restricted to an individual chain, by attaching ':chain-id' (e.g., 2tra:A), with '%' matching any chain.

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