RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

(009)-Hairpin cluster 409 (cutoff=2.0 Å)
Cluster size	78 structure(s)
Representative structure	2aw4:B (&rarr PDB)
Downloads	Representative structure (PDB) (MC-Annotate) Member list
Consensus sequence	MURRRAGYK
Cluster members
GUGAGAGUC 1xbp:0, 297-307 UUAGAAGCA 1c04:E, 14-24, 1c2w:B, 1064-1074, 1j5a:A, 1017-1027, 1jj2:0, 1137-1147, 1jzx:A, 1017-1027, 1jzy:A, 1017-1027, 1jzz:A, 1017-1027, 1k01:A, 1017-1027, 1k73:A, 1137-1147, 1k8a:A, 1137-1147, 1k9m:A, 1137-1147, 1kc8:A, 1137-1147, 1kd1:A, 1137-1147, 1kqs:0, 1137-1147, 1m1k:A, 1137-1147, 1m90:A, 1137-1147, 1n8r:A, 1137-1147, 1nji:A, 1137-1147, 1nkw:0, 1009-1019, 1nwx:0, 1009-1019, 1nwy:0, 1009-1019, 1ond:0, 1009-1019, 1pnu:0, 1025-1035, 1pny:0, 1025-1035, 1q7y:A, 1137-1147, 1q81:A, 1137-1147, 1q82:A, 1137-1147, 1q86:A, 1137-1147, 1qa6:C, 14-24, 1qa6:D, 14-24, 1qvf:0, 1137-1147, 1qvg:0, 1137-1147, 1s72:0, 1137-1147, 1sm1:0, 1009-1019, 1vs6:B, 1048-1058, 1vs8:B, 1048-1058, 1w2b:0, 1137-1147, 1y69:0, 1009-1019, 2aar:0, 1009-1019, 2aw4:B, 1048-1058, 2awb:B, 1048-1058, 2gya:0, 991-1001, 2gyc:0, 991-1001, 2i2t:B, 1048-1058, 2i2v:B, 1048-1058, 2j28:B, 1048-1058, 2jq7:B, 14-24, 2ogm:0, 1009-1019, 2ogn:0, 1009-1019, 2ogo:0, 1008-1018, 2qa4:0, 1139-1149, 2qam:B, 1048-1058, 2qao:B, 1048-1058, 2qba:B, 1048-1058, 2qbc:B, 1048-1058, 2qbe:B, 1048-1058, 2qbg:B, 1048-1058, 2qbi:B, 1048-1058, 2qbk:B, 1048-1058, 2qex:0, 1137-1147, 2qov:B, 1048-1058, 2qox:B, 1048-1058, 2qoz:B, 1048-1058, 2qp1:B, 1048-1058, 2vhm:B, 1048-1058, 2z4l:B, 1048-1058, 2z4n:B, 1048-1058, 2zjp:X, 987-997, 2zjq:X, 987-997, 3bbx:B, 1126-1136, 3ccj:0, 1137-1147, 3ccr:0, 1137-1147, 3cf5:X, 987-997, 3cpw:0, 1137-1147, 3deg:G, 22-32, 3df2:B, 1048-1058, 3df4:B, 1048-1058