Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
(008)-Hairpin cluster 180 (cutoff=2.5 Å)
Cluster size 116 structure(s)
Representative structure 1n8r:A (&rarr PDB)
Downloads Representative structure (PDB) (MC-Annotate)
Member list
Consensus sequence NBNNNNNN
Cluster members
ACAAUUUG
1ylg:A, 11-20, 1ync:A, 11-20
ACGCCAGU
2vhn:B, 2106-2115
AGGAGACU
1grz:A, 137-146, 1grz:B, 137-146
AUAAUUUG
1yng:A, 11-20
AUUGAGGU
1nkw:0, 787-796, 1nwx:0, 787-796, 1nwy:0, 787-796, 1ond:0, 787-796, 1xbp:0, 787-796, 1z58:2, 781-790, 2aar:0, 787-796
AUUUAGGU
2gyc:0, 761-770
CCCUUGGG
2hhh:A, 180-189, 3d5a:A, 180-189, 3d5c:A, 180-189
CCGCAAGG
1voq:A, 888-897, 1vos:A, 888-897, 1vov:A, 888-897, 1vox:A, 888-897, 1voz:A, 888-897, 2f4v:A, 868-877
CCGCGAGG
2uxd:A, 981-990
CCGUGGUA
2gya:0, 328-337, 2gyc:0, 328-337
CCUACGGG
1n36:A, 331-340
CCUUCGGG
1aud:B, 8-17, 1n34:A, 408-417, 2b64:A, 408-417, 2b9m:A, 408-417, 2b9o:A, 408-417, 2v46:A, 408-417, 2v48:A, 408-417
CGAACUCG
2vpl:B, 17-26
CGUAACAG
1yjw:0, 1164-1173
CUCCCGAA
2gv3:A, 7-16
GGGAAACU
1m5k:B, 72-81, 1m5o:B, 72-81, 1n33:A, 146-155, 2f4v:A, 146-155, 2ow8:y, 146-155
GGUUCGCC
2czj:B, 23-32, 2czj:F, 23-32
GUUAAGUC
1i97:A, 1069-1078, 2gyb:A, 1048-1057
GUUGAAAA
1mt4:A, 8-17
UCGUAAGA
1vor:B, 131-140, 1vou:B, 131-140, 1vow:B, 131-140, 1voy:B, 131-140, 1vp0:B, 131-140
UCUUCGGA
1yls:B, 18-27, 1yls:D, 18-27
UCUUCGGU
2hgh:B, 30-39
UGAGCUGU
2qh2:A, 8-17
UUGGAUAU
1ffk:0, 381-390, 1jj2:0, 382-391, 1k73:A, 382-391, 1k8a:A, 382-391, 1k9m:A, 382-391, 1kc8:A, 382-391, 1kd1:A, 382-391, 1kqs:0, 382-391, 1m1k:A, 382-391, 1m90:A, 382-391, 1n8r:A, 382-391, 1nji:A, 382-391, 1q7y:A, 382-391, 1q81:A, 382-391, 1q82:A, 382-391, 1q86:A, 382-391, 1qvf:0, 382-391, 1qvg:0, 382-391, 1s1i:3, 381-390, 1s72:0, 382-391, 1vq4:0, 382-391, 1vq5:0, 382-391, 1vq6:0, 382-391, 1vq7:0, 382-391, 1vq8:0, 382-391, 1vq9:0, 382-391, 1vqk:0, 382-391, 1vql:0, 382-391, 1vqm:0, 382-391, 1vqn:0, 382-391, 1vqo:0, 382-391, 1vqp:0, 382-391, 1w2b:0, 382-391, 1yhq:0, 382-391, 1yi2:0, 382-391, 1yij:0, 382-391, 1yit:0, 382-391, 1yj9:0, 382-391, 1yjn:0, 382-391, 1yjw:0, 382-391, 2otj:0, 382-391, 2otl:0, 382-391, 2qa4:0, 382-391, 2qex:0, 382-391, 3cc2:0, 382-391, 3cc4:0, 382-391, 3cc7:0, 382-391, 3cce:0, 382-391, 3ccj:0, 382-391, 3ccl:0, 382-391, 3ccm:0, 382-391, 3ccq:0, 382-391, 3ccr:0, 382-391, 3ccs:0, 382-391, 3ccu:0, 382-391, 3ccv:0, 382-391, 3cd6:0, 382-391, 3cma:0, 382-391, 3cme:0, 382-391, 3cpw:0, 382-391